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Report for CCDS72275.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72275.1 Public Mus musculus 9 Nedd4 23 108 98 CCDS HistoryNCBI Gene:17999Re-query CCDS DB by CCDS ID:72275.1Re-query CCDS DB by GeneID:17999See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72275.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034740.14 ENSMUSP00000034740.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034740.14Link to Ensembl Protein Viewer:ENSMUSP00000034740.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034740Re-query CCDS DB by Protein ID:ENSMUSP00000034740
Original member Current member NCBI NM_010890.4 NP_035020.2 Accepted alive Link to Nucleotide Sequence:NM_010890.4Link to Protein Sequence:NP_035020.2Re-query CCDS DB by Nucleotide ID:NM_010890Re-query CCDS DB by Protein ID:NP_035020Link to BLAST:NP_035020.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035020.2 887 P46935 887 100% 0 0

Chromosomal Locations for CCDS 72275.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 72662557 72662613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72669952 72670116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72671230 72671303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72677315 72677393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72677493 72677531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72686061 72686114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72709112 72709162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72710478 72710539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72712167 72712266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72718218 72718384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72721301 72721418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72721497 72721661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72725017 72725082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72726411 72726530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72730902 72730973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72731222 72731276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72731378 72731436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72732592 72732657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72735010 72735239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72736667 72736788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72736874 72736944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72739040 72739135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72739455 72739528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72740168 72740228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72741628 72741687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72742653 72742760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72743540 72743636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72746407 72746479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72747126 72747228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2664 nt):
ATGAGCTCGGACATGGCAGCCGACGAGTCGGAGGCCCCAGTACTCTCGGAGGACGAGGTATGGGAGTTTT
GCCTGGATAAGACAGAAGATGGTGGCGGATCCCCCGGAAGTGATGTTACAGATACTTGTGAGCCTCCATG
TGGATGCTGGGAGTTGAATCCGAATTCCCTGGAAGAGGAGCACGTGCTGTTCACTGCTGATCCGTACCTG
GAGCTCCACAACGATGACACACGAGTTGTGAGAGTGAAGGTTATAGCTGGCATAGGCCTGGCCAAGAAAG
ACATCTTGGGAGCCAGTGATCCTTACGTAAGAGTGACATTGTATGACCCGATGAGTGGAATCCTTACCAG
CGTGCAGACAAAAACTATCAAAAAGTCTTTGAATCCAAAATGGAATGAAGAAATACTGTTCAGGGTCCTT
CCACAGCGACACCGCATTCTTTTCGAAGTGTTTGATGAAAATCGTTTGACAAGAGATGATTTCCTAGGTC
AAGTGGATGTCCCTCTCTATCCTTTACCGACTGAAAACCCAAGAATGGAGAGACCATATACATTTAAGGA
TTTTGTTCTTCATCCAAGAAGTCACAAATCAAGAGTTAAAGGTTATCTGAGATTAAAAATGACTTATTTA
CCTAAAAATGGCTCAGAAGATGAAAATGCAGACCAGGCTGAGGAGTTAGAGCCTGGCTGGGTTGTTTTGG
ACCAACCAGATGCTGCCACTCATTTGCCGCATCCACCAGAACCCTCTCCCCTACCTCCAGGATGGGAAGA
GAGGCAGGATGTCCTTGGAAGGACCTACTACGTAAACCATGAATCTAGAAGAACACAGTGGAAAAGGCCA
AGCCCTGACGATGACCTCACGGATGAAGACAATGATGATATGCAGCTGCAAGCGCAGCGAGCATTCACCA
CCAGGCGGCAGATATCGGAGGATGTGGATGGCCCTGACAACCGGGAGTCCCCTGAGAATTGGGAAATCGT
ACGAGAAGATGAAAACACCGAGTATAGTGGTCAGGCTGTCCAGTCACCTCCATCGGGTCACATTGATGTG
CAGACTCACCTTGCAGAAGAGTTTAATACCAGACTTGCTGTGTGTGGAAATCCAGCCACCAGCCAGCCGG
TTACCAGCTCAAATCATTCCAGCAGAGGAGGCAGCTTGCAGACCTGTATCTTTGAGGAACAGCCTACACT
TCCTGTGCTTTTGCCTACTTCATCTGGATTGCCACCAGGTTGGGAAGAAAAACAAGATGACAGAGGAAGA
TCATACTATGTAGACCACAACTCTAAAACCACCACATGGTCCAAGCCCACCATGCAGGATGATCCAAGAT
CGAAAATCCCTGCTCATCTGAGAGGAAAGACTGACTCCAATGACCTGGGACCCTTACCTCCAGGCTGGGA
AGAAAGAACCCACACAGATGGGCGAGTCTTCTTCATAAACCACAATATAAAGAAGACCCAGTGGGAAGAT
CCTCGCCTGCAGAACGTGGCAATCACTGGACCAGCAGTGCCCTACTCCAGAGATTACAAGAGAAAGTACG
AGTTCTTCAGAAGGAAGCTCAAGAAGCAGACTGACATTCCAAACAAATTTGAAATGAAGCTTCGCCGCGC
AAACATTCTGGAGGATTCTTACCGGAGGATTATGGGTGTGAAGAGAGCTGACTTGCTCAAGGCCAGACTC
TGGATTGAGTTTGATGGTGAAAAGGGCCTTGACTATGGAGGGGTTGCCAGAGAGTGGTTCTTCCTCATCT
CGAAGGAAATGTTCAACCCTTACTACGGCCTGTTTGAATATTCTGCTACGGATAATTACACCCTACAGAT
AAATCCTAACTCGGGCTTGTGTAATGAAGATCACCTCTCATACTTCAAGTTCATTGGCCGTGTGGCTGGG
ATGGCAGTTTATCATGGCAAGCTGTTGGATGGGTTTTTCATCCGTCCGTTTTACAAGATGATGCTTCAGA
AACTGATAACACTGCACGACATGGAGTCCGTGGATAGTGAATATTACAGTTCTCTGCGATGGATTCTTGA
AAATGACCCGACGGAGCTGGACCTGAGATTTATCATAGATGAAGAACTTTTTGGACAGACACATCAGCAC
GAACTGAAAACCGGAGGATCAGAGATTGTTGTCACCAATAAGAACAAAAAGGAGTATATCTACCTTGTAA
TACAATGGCGATTTGTGAACCGTATCCAGAAGCAAATGGCAGCTTTTAAAGAGGGATTTTTTGAACTGAT
ACCACAGGATCTCATCAAGATATTTGATGAAAATGAGCTAGAGCTTCTCATGTGTGGTCTGGGAGATGTG
GATGTGAACGACTGGCGGGAACACACAAAATACAAAAATGGCTACAGCATGAACCACCAGGTCATCCACT
GGTTCTGGAAGGCTGTTTGGATGATGGATTCGGAAAAAAGAATACGCTTACTTCAGTTTGTCACTGGCAC
ATCCCGTGTGCCGATGAATGGGTTTGCTGAACTCTATGGCTCGAATGGACCACAATCCTTCACAGTGGAA
CAATGGGGCACCCCTGATAAGCTGCCAAGAGCACACACCTGCTTCAATCGCCTGGACCTGCCACCCTACG
AATCCTTTGACGAACTCTGGGATAAACTTCAGATGGCAATTGAGAACACACAGGGCTTTGATGGCGTTGA
TTAG

Translation (887 aa):
MSSDMAADESEAPVLSEDEVWEFCLDKTEDGGGSPGSDVTDTCEPPCGCWELNPNSLEEEHVLFTADPYL
ELHNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVL
PQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYL
PKNGSEDENADQAEELEPGWVVLDQPDAATHLPHPPEPSPLPPGWEERQDVLGRTYYVNHESRRTQWKRP
SPDDDLTDEDNDDMQLQAQRAFTTRRQISEDVDGPDNRESPENWEIVREDENTEYSGQAVQSPPSGHIDV
QTHLAEEFNTRLAVCGNPATSQPVTSSNHSSRGGSLQTCIFEEQPTLPVLLPTSSGLPPGWEEKQDDRGR
SYYVDHNSKTTTWSKPTMQDDPRSKIPAHLRGKTDSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWED
PRLQNVAITGPAVPYSRDYKRKYEFFRRKLKKQTDIPNKFEMKLRRANILEDSYRRIMGVKRADLLKARL
WIEFDGEKGLDYGGVAREWFFLISKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFKFIGRVAG
MAVYHGKLLDGFFIRPFYKMMLQKLITLHDMESVDSEYYSSLRWILENDPTELDLRFIIDEELFGQTHQH
ELKTGGSEIVVTNKNKKEYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDV
DVNDWREHTKYKNGYSMNHQVIHWFWKAVWMMDSEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQSFTVE
QWGTPDKLPRAHTCFNRLDLPPYESFDELWDKLQMAIENTQGFDGVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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