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Report for CCDS17415.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17415.1 Public Mus musculus 3 Serpini1 23 108 98 CCDS HistoryNCBI Gene:20713Re-query CCDS DB by CCDS ID:17415.1Re-query CCDS DB by GeneID:20713See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17415.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029423.8 ENSMUSP00000029423.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029423.8Link to Ensembl Protein Viewer:ENSMUSP00000029423.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029423Re-query CCDS DB by Protein ID:ENSMUSP00000029423
Original member Current member NCBI NM_009250.3 NP_033276.1 Accepted alive Link to Nucleotide Sequence:NM_009250.3Link to Protein Sequence:NP_033276.1Re-query CCDS DB by Nucleotide ID:NM_009250Re-query CCDS DB by Protein ID:NP_033276Link to BLAST:NP_033276.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033276.1 410 O35684 410 100% 0 0

Chromosomal Locations for CCDS 17415.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 75613098 75613347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75614454 75614684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75616568 75616762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75619119 75619323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75623859 75623956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75637918 75638004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75640249 75640338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75640675 75640751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1233 nt):
ATGACTTACCTTGAACTGCTTGCTTTGCTGGCCTTGCAAAGTGTGGTGACAGGGGCAACGTTCCCAGATG
AAACCATAACTGAGTGGTCAGTGAACATGTATAACCACCTTCGAGGCACCGGGGAAGATGAAAACATTCT
CTTCTCTCCACTAAGCATTGCCCTTGCGATGGGAATGATGGAGCTTGGGGCTCAAGGATCTACTAGGAAA
GAAATCCGCCATTCAATGGGATATGAGGGTCTGAAAGGTGGTGAAGAATTTTCTTTCCTGAGGGATTTTT
CTAATATGGCCTCTGCCGAAGAAAACCAATATGTGATGAAACTTGCCAATTCGCTCTTTGTACAAAATGG
ATTTCATGTCAATGAGGAATTCTTGCAAATGCTGAAAATGTACTTTAATGCAGAAGTCAACCATGTGGAC
TTCAGTCAAAATGTGGCTGTGGCTAACTCCATCAATAAATGGGTGGAGAATTATACAAACAGTCTGTTGA
AAGATCTGGTGTCTCCGGAGGACTTTGATGGTGTCACTAATTTGGCCCTCATCAATGCTGTATATTTCAA
AGGAAACTGGAAGTCTCAGTTTAGACCTGAAAATACCAGAACTTTCTCCTTCACGAAAGATGATGAAAGT
GAAGTGCAGATTCCAATGATGTATCAACAAGGAGAATTTTATTATGGTGAATTTAGTGATGGATCCAATG
AGGCTGGTGGTATCTACCAAGTCCTTGAGATACCCTATGAGGGAGATGAGATCAGCATGATGCTGGCACT
GTCCAGACAGGAAGTCCCACTGGCCACACTGGAGCCTCTGCTCAAAGCACAGCTGATCGAAGAATGGGCA
AACTCTGTGAAGAAACAAAAGGTGGAAGTGTACTTGCCCAGGTTCACTGTGGAACAGGAAATTGATTTAA
AAGACATCTTGAAAGCCCTTGGGGTCACTGAAATTTTCATCAAAGATGCAAATTTGACTGCCATGTCAGA
TAAGAAAGAGCTGTTCCTCTCCAAAGCTGTTCACAAGTCCTGCATTGAGGTTAATGAAGAAGGGTCAGAA
GCCGCTGCAGCCTCCGGAATGATTGCGATTAGTAGGATGGCTGTGCTGTACCCTCAGGTTATTGTCGACC
ATCCATTTCTCTATCTTATCAGGAACAGGAAATCTGGCATAATCTTATTCATGGGACGAGTCATGAACCC
TGAAACAATGAATACAAGTGGCCATGACTTTGAGGAACTTTAA

Translation (410 aa):
MTYLELLALLALQSVVTGATFPDETITEWSVNMYNHLRGTGEDENILFSPLSIALAMGMMELGAQGSTRK
EIRHSMGYEGLKGGEEFSFLRDFSNMASAEENQYVMKLANSLFVQNGFHVNEEFLQMLKMYFNAEVNHVD
FSQNVAVANSINKWVENYTNSLLKDLVSPEDFDGVTNLALINAVYFKGNWKSQFRPENTRTFSFTKDDES
EVQIPMMYQQGEFYYGEFSDGSNEAGGIYQVLEIPYEGDEISMMLALSRQEVPLATLEPLLKAQLIEEWA
NSVKKQKVEVYLPRFTVEQEIDLKDILKALGVTEIFIKDANLTAMSDKKELFLSKAVHKSCIEVNEEGSE
AAAASGMIAISRMAVLYPQVIVDHPFLYLIRNRKSGIILFMGRVMNPETMNTSGHDFEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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