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Report for CCDS37729.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37729.1 Public Mus musculus 18 Odad2 23 108 98 CCDS HistoryNCBI Gene:74934Re-query CCDS DB by CCDS ID:37729.1Re-query CCDS DB by GeneID:74934See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37729.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081275.4 ENSMUSP00000080028.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081275.4Link to Ensembl Protein Viewer:ENSMUSP00000080028.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000081275Re-query CCDS DB by Protein ID:ENSMUSP00000080028
Original member Current member EBI ENSMUST00000234788.1 ENSMUSP00000157197.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234788.1Link to Ensembl Protein Viewer:ENSMUSP00000157197.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234788Re-query CCDS DB by Protein ID:ENSMUSP00000157197
Original member Current member NCBI NM_001357492.1 NP_001344421.1 Accepted alive Link to Nucleotide Sequence:NM_001357492.1Link to Protein Sequence:NP_001344421.1Re-query CCDS DB by Nucleotide ID:NM_001357492Re-query CCDS DB by Protein ID:NP_001344421Link to BLAST:NP_001344421.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344421.1 1037 B2RY50 1037 100% 0 0

Chromosomal Locations for CCDS 37729.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 7088454 7088567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7127212 7127433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7129399 7129587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7181734 7181848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7211399 7211641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7214569 7214723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7216935 7217045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7217748 7217990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7222546 7222755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7223530 7223676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7265001 7265148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7266883 7266981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7268400 7268587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7273159 7273275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7285347 7285483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7285686 7285792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7286661 7286847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7288484 7288641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7294388 7294611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3114 nt):
ATGGGTGTGGCGTTGACCAGGTTGGCACAGTGGACTGCTGCGGGATATGAGACTGGAACCCTGGAGATCA
CTCCTCTGAATGAGTCGATATTGAATGAAATTACTAAGTTTGTGGAATCTTTTTCTTATAAATATCCCCA
AGAGGCAAAATTTGTTTTTGTAGAACCACTTGAGTGGAAAACATATTTGGAACCCTCAGCATTTGAATTA
GGTTATGTTGTCAGTGCAACAACAGCTGAATCAGAAGAAACTGGTAAAGATGGACAGCCCCTGCTGTTTC
TCTCTGTACCTTATATTAAAGTGAGGAGCTTTGGGCAACTGTCACAGTTGTTATCCATTGCCACAGACAG
CAAGCTGCAGGAGGCACAGGCCTGTATTGAAGCAAACAGAGACCCTGTAGTGAAAATCTTGGGTCCAGAT
TATAATGAGATGAAAGAAGACCCCACTCGCTTGACTCTTCTCGATACGATCATCAAAGATAAAGAGACAT
ATATGAAAAGGAAAGTGGCCATCTTGCTGAAGCAGCTGGACCTGCACCTGCTCAACCATTCCCTAAAGTA
CATTTCTCTAGAGATCAGTTTGAATCCAGGGACTTTTAAGAAAGATATTGAGTTGCTCAAACGTTTCTCA
GGAAAAGGGGAACAGACGGTGCTGGAGTCGATCGAATACACTTCAGATTATGAATTTTCAAATGGGTGTC
GTGCCCCACCATGGAGACAGATTCAAGGAGAAATCTGTTACGTGCTGGTGAAGCCACATGACATGGAAAC
TCTGTGCCTTACCTGCAGCACAGAAGGGGTGTTTTTAAATGGTGGAAAAACAGAAGAGGAAGGGGAGATT
AACTATGAGAGAAAAGGTGAAATTTACAAGGACCTTGTGACATGTTTAAAGGACAAATCACCAGTATTTT
CAGAGAATATGTCTAAGCATGAGATTAGGTTTACTGAGGAGCAACAGAAGGATAATCAGATTTTTGAGAA
ACCCAAGACAGAAGATGGGCACTCATCTGTAGCTGGCTCAGAGAAGAGTAAAATTGAAAAGATTAGCTTT
GGGAAAAGTCCTATGACCAAGAGATTGGAGCCAAGCTTAAACTGGAGAGTAACTGTTGATTACAAAGACC
ACAAAAGCTCTATAAAAGATAGCCAAGAGGAAAAACAAGGAAAATTGGAAAAGTCATCATCGGTGTCTGT
GGCCCCAAGCCGTGCACAGTCACATCGTAAGGGTGGTGAGAAGGTTGAAGAGACTGTCAGCGAGAGCTCC
TCAGAGAGTGAGGAGGACGAGGAGCCTCCAGACCACCGCCAGGAAGCCAATGCAGACCTCCCTTCGGAAT
ACTGGCAGATTCAGAAGCTGGTGAAATATTTAAAGGGGGGGAATCAGACGGCAACGGTGATTGCCTTGTG
TTCCATGAGGGATTTCAACCTAGCTCAAGAGACCTGCCAGCTAGCAATTAGAGATGTTGGCGGGCTTGAA
GTCTTAATAAATCTGCTCGATACAGATGAAGTCAAGTGCAAGATTGGTTCATTAAAAATCCTGAAGGAAA
TCAGTCATAATCCTCAAATCAGACGTAATATTGTTGACCTTGGGGGCCTACCAATTATGGTTAATATACT
TGATTCTCCACACAAGAGTCTTAAGTGTTTGTCAGCTGAGACGATAGCAAATGTTGCCAAGTTCAAGAGA
GCTCGGCGGGCAGTGAGGCAACACGGAGGCATTACCAAGCTGGTTGCTCTATTGGACTGTGGACAGAATT
CAACAGAGCCAACTCAACCAAGCCTGTATGAAACCAGGGATGTAGAAGTGGCTCGATGCGGGGCCTTGGC
GCTCTGGAGCTGCAGTAAGAGTCACTCGAACAAAGAAGCCATTCGTAAAGCTGGGGGCATCCCCTTGCTG
GCTCGGCTACTGAAGACTTCACATGAAAACATGCTCATTCCAGTGGTGGGGACATTGCAAGAATGTGCAT
CAGAGGAAAACTACCGAGCTGCCATCAAGGCAGAAAGGATCATAGAGAACCTCGTGAAGAACCTGAACAG
CGAGAATGAGCAGCTCCAGGAGCACTGTGCCATGGCCATCTACCAGTGTGCTGAAGATGAGGAGACCCGA
GACCTGGTTAGACTGCATGGAGGACTTAAACCCCTGGCCAGTCTACTCAATAATACAGACAATAAAGAAC
GATTAGCTGCTGTTACTGGGGCAATATGGAAATGCTCCATCAGCAAAGAAAATGTGATTAAGTTTCGAGA
ATACAAAGCCATTGAGACACTGGTTGGACTTTTAACTGATCAGCCTGAAGAAGTGCTCGTGAATGTGGTT
GGGGCCTTGGGAGAATGCTGTCAAGAATATGAAAATCGGGTCCTAGTCCGGAAGTGTGGTGGCATCCAAC
CTCTCGTGAACCTCCTGGTTGGAATAAACCAAGCACTTCTTGTGAATGTCACAAAAGCTGTGGGCGCATG
CGCAGTAGAACCAGAAAGTATGGCGATAATTGACCGCTTAGATGGAGTTCGCTTATTGTGGTCCCTGCTC
AAAAACCCACACCCAGATGTGAAGGCCAGTGCAGCATGGGCACTTTGTCCCTGCATTGAAAATGCAAAGG
ATGCTGGAGAAATGGTTCGTTCCTTTGTTGGTGGTTTGGAACTTGTTGTCAACTTACTGAAGTCAGATAA
TAAAGAGGTCCTGGCCAGTGTCTGTGCTGCTATCACCAACATAGCAAAAGACCAGGAGAACTTAGCTGTT
ATTACAGACCATGGAGTCGTTCCTCTATTGTCCAAACTTGCCAATACAAATAATGACAAGCTGAGGCGTC
ACCTGGCAGAAGCCATCTCACGATGTTGTATGTGGGGAAGGAACAGAGTGGCCTTCGGAGAACACAAGGC
AGTGGCTCCACTGGTGCGTTATCTGAAGTCAAATGACACCAATGTGCATCGAGCTACAGCTCAGGCCTTG
TACCAGCTCTCAGAAGATGCTGATAACTGCATCACTATGCACGAGAATGGTGCTGTAAAGCTTCTACTGG
ATATGGTTGGGTCCCCAGACCAGGATCTCCAGGAAGCAGCTGCTGGCTGTATATCCAATATCCGAAGACT
GGCTCTTGCTACAGAAAAGGCTAGATACAACTGA

Translation (1037 aa):
MGVALTRLAQWTAAGYETGTLEITPLNESILNEITKFVESFSYKYPQEAKFVFVEPLEWKTYLEPSAFEL
GYVVSATTAESEETGKDGQPLLFLSVPYIKVRSFGQLSQLLSIATDSKLQEAQACIEANRDPVVKILGPD
YNEMKEDPTRLTLLDTIIKDKETYMKRKVAILLKQLDLHLLNHSLKYISLEISLNPGTFKKDIELLKRFS
GKGEQTVLESIEYTSDYEFSNGCRAPPWRQIQGEICYVLVKPHDMETLCLTCSTEGVFLNGGKTEEEGEI
NYERKGEIYKDLVTCLKDKSPVFSENMSKHEIRFTEEQQKDNQIFEKPKTEDGHSSVAGSEKSKIEKISF
GKSPMTKRLEPSLNWRVTVDYKDHKSSIKDSQEEKQGKLEKSSSVSVAPSRAQSHRKGGEKVEETVSESS
SESEEDEEPPDHRQEANADLPSEYWQIQKLVKYLKGGNQTATVIALCSMRDFNLAQETCQLAIRDVGGLE
VLINLLDTDEVKCKIGSLKILKEISHNPQIRRNIVDLGGLPIMVNILDSPHKSLKCLSAETIANVAKFKR
ARRAVRQHGGITKLVALLDCGQNSTEPTQPSLYETRDVEVARCGALALWSCSKSHSNKEAIRKAGGIPLL
ARLLKTSHENMLIPVVGTLQECASEENYRAAIKAERIIENLVKNLNSENEQLQEHCAMAIYQCAEDEETR
DLVRLHGGLKPLASLLNNTDNKERLAAVTGAIWKCSISKENVIKFREYKAIETLVGLLTDQPEEVLVNVV
GALGECCQEYENRVLVRKCGGIQPLVNLLVGINQALLVNVTKAVGACAVEPESMAIIDRLDGVRLLWSLL
KNPHPDVKASAAWALCPCIENAKDAGEMVRSFVGGLELVVNLLKSDNKEVLASVCAAITNIAKDQENLAV
ITDHGVVPLLSKLANTNNDKLRRHLAEAISRCCMWGRNRVAFGEHKAVAPLVRYLKSNDTNVHRATAQAL
YQLSEDADNCITMHENGAVKLLLDMVGSPDQDLQEAAAGCISNIRRLALATEKARYN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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