NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20902.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20902.1 Public Mus musculus 7 Ckm 23 108 98 CCDS HistoryNCBI Gene:12715Re-query CCDS DB by CCDS ID:20902.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20902.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000208710.1 ENSMUSP00000146972.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208710.1Link to Ensembl Protein Viewer:ENSMUSP00000146972.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208710Re-query CCDS DB by Protein ID:ENSMUSP00000146972
Original member Current member NCBI NM_007710.2 NP_031736.1 Accepted alive Link to Nucleotide Sequence:NM_007710.2Link to Protein Sequence:NP_031736.1Re-query CCDS DB by Nucleotide ID:NM_007710Re-query CCDS DB by Protein ID:NP_031736Link to BLAST:NP_031736.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031736.1 381 P07310 381 100% 0 0

Chromosomal Locations for CCDS 20902.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 19414138 19414330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19414897 19415051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19415401 19415533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19416719 19416890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19419439 19419562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19420107 19420296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19421208 19421386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGCCGTTCGGCAACACCCACAACAAGTTCAAGCTGAACTACAAGCCTCAGGAGGAGTACCCAGACCTCA
GCAAGCACAACAATCACATGGCCAAGGTGCTGACCCCTGACCTCTACAATAAGCTTCGCGATAAGGAGAC
ACCATCCGGCTTCACTCTGGACGATGTCATCCAGACTGGGGTGGACAACCCAGGTCACCCCTTCATCATG
ACGGTGGGCTGTGTGGCCGGCGATGAGGAGTCCTACACGGTCTTCAAGGACCTGTTTGATCCCATCATCC
AGGACCGCCATGGCGGCTACAAACCCACAGACAAGCATAAGACCGACCTCAACCACGAGAACCTCAAGGG
TGGAGACGACCTGGACCCCAACTATGTGCTGAGCAGCCGCGTGCGCACTGGCCGCAGCATCAAGGGTTAC
ACTCTGCCTCCGCACTGCTCCCGTGGAGAGCGCCGTGCAGTGGAGAAGCTGTCCGTGGAAGCTCTCAACA
GCCTGACGGGCGAGTTCAAGGGCAAGTACTACCCTCTGAAGAGCATGACGGAGCAGGAACAGCAGCAGCT
CATTGATGACCACTTCCTGTTTGACAAGCCCGTGTCACCTCTGCTGCTGGCCTCAGGCATGGCCCGAGAC
TGGCCCGATGCCCGTGGCATCTGGCACAACGACAACAAAAGCTTCCTTGTGTGGGTGAACGAGGAGGACC
ACCTCCGCGTGATCTCCATGGAGAAGGGAGGCAATATGAAGGAGGTTTTCCGCCGCTTCTGCGTGGGCCT
GCAGAAGATTGAGGAGATCTTCAAGAAGGCTGGTCACCCCTTCATGTGGAACGAGCACCTGGGCTACGTG
CTCACCTGCCCCTCCAACCTGGGCACCGGGCTGCGCGGAGGCGTGCACGTGAAGCTGGCGAACCTGAGCA
AGCACCCCAAGTTTGAGGAGATTCTCACTCGCCTTCGTCTGCAGAAGCGCGGCACAGGTGGCGTGGACAC
GGCTGCGGTGGGCGCCGTGTTCGACATCTCCAACGCCGATCGGCTGGGCTCATCCGAAGTCGAACAGGTG
CAGCTGGTGGTGGATGGCGTGAAGCTTATGGTGGAGATGGAGAAGAAGCTGGAAAAGGGCCAGTCCATCG
ACGACATGATCCCCGCGCAGAAGTAG

Translation (381 aa):
MPFGNTHNKFKLNYKPQEEYPDLSKHNNHMAKVLTPDLYNKLRDKETPSGFTLDDVIQTGVDNPGHPFIM
TVGCVAGDEESYTVFKDLFDPIIQDRHGGYKPTDKHKTDLNHENLKGGDDLDPNYVLSSRVRTGRSIKGY
TLPPHCSRGERRAVEKLSVEALNSLTGEFKGKYYPLKSMTEQEQQQLIDDHFLFDKPVSPLLLASGMARD
WPDARGIWHNDNKSFLVWVNEEDHLRVISMEKGGNMKEVFRRFCVGLQKIEEIFKKAGHPFMWNEHLGYV
LTCPSNLGTGLRGGVHVKLANLSKHPKFEEILTRLRLQKRGTGGVDTAAVGAVFDISNADRLGSSEVEQV
QLVVDGVKLMVEMEKKLEKGQSIDDMIPAQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH