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Report for CCDS17239.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17239.1 Public Mus musculus 3 Fabp12 23 108 98 CCDS HistoryNCBI Gene:75497Re-query CCDS DB by CCDS ID:17239.1Re-query CCDS DB by GeneID:75497See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17239.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029043.12 ENSMUSP00000029043.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029043.12Link to Ensembl Protein Viewer:ENSMUSP00000029043.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000029043Re-query CCDS DB by Protein ID:ENSMUSP00000029043
Original member Current member EBI ENSMUST00000117917.7 ENSMUSP00000112464.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117917.7Link to Ensembl Protein Viewer:ENSMUSP00000112464.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117917Re-query CCDS DB by Protein ID:ENSMUSP00000112464
Original member Current member EBI ENSMUST00000119761.1 ENSMUSP00000112958.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119761.1Link to Ensembl Protein Viewer:ENSMUSP00000112958.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119761Re-query CCDS DB by Protein ID:ENSMUSP00000112958
Original member Current member EBI ENSMUST00000172126.7 ENSMUSP00000131101.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172126.7Link to Ensembl Protein Viewer:ENSMUSP00000131101.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172126Re-query CCDS DB by Protein ID:ENSMUSP00000131101
Original member Current member NCBI NM_001357159.1 NP_001344088.1 Accepted alive Link to Nucleotide Sequence:NM_001357159.1Link to Protein Sequence:NP_001344088.1Re-query CCDS DB by Nucleotide ID:NM_001357159Re-query CCDS DB by Protein ID:NP_001344088Link to BLAST:NP_001344088.1
Original member Current member NCBI NM_001357160.1 NP_001344089.1 Accepted alive Link to Nucleotide Sequence:NM_001357160.1Link to Protein Sequence:NP_001344089.1Re-query CCDS DB by Nucleotide ID:NM_001357160Re-query CCDS DB by Protein ID:NP_001344089Link to BLAST:NP_001344089.1
Original member Current member NCBI NM_001357161.1 NP_001344090.1 Accepted alive Link to Nucleotide Sequence:NM_001357161.1Link to Protein Sequence:NP_001344090.1Re-query CCDS DB by Nucleotide ID:NM_001357161Re-query CCDS DB by Protein ID:NP_001344090Link to BLAST:NP_001344090.1
Original member Current member NCBI NM_029310.1 NP_083586.1 Accepted alive Link to Nucleotide Sequence:NM_029310.1Link to Protein Sequence:NP_083586.1Re-query CCDS DB by Nucleotide ID:NM_029310Re-query CCDS DB by Protein ID:NP_083586Link to BLAST:NP_083586.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344088.1 132 Q9DAK4 132 100% 0 0
NP_001344089.1 132 Q9DAK4 132 100% 0 0
NP_001344090.1 132 Q9DAK4 132 100% 0 0
NP_083586.1 132 Q9DAK4 132 100% 0 0

Chromosomal Locations for CCDS 17239.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 10246002 10246052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10247613 10247714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10250040 10250212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10252237 10252309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (399 nt):
ATGGTGGACCAGCTTCAAGGAACATGGAAGTCTGTTTCTTGTGACAATTTTGAAAACTACATGAAGGAAT
TGGGAGTAGGAAGAGCCAGCAGGAAACTGGGCTGTCTGGCAAAGCCCACTGTGACCATCAGCACAGACGG
AGATCTGATCACCATTAAAACCAAAAGCATCTTTAAAAACAAGGAGATTTCCTTCAAGCTGGGAGAGGAG
TTTGAGGAAACCACACCAAGTGGCCGCAAAAGCAAGAGTACAGTGATCTTAGATAATGACTCCTTGGTTC
AAGTCCAGGACTGGGATGGCAAGGAAGCCACCATCTGCAGGAGACTGGTAGATGGGAAAATGGTGGTGGA
AAGTGCAGTGAATAATGTCACCTGTACCCGAACATACCAGAGAGTTTAA

Translation (132 aa):
MVDQLQGTWKSVSCDNFENYMKELGVGRASRKLGCLAKPTVTISTDGDLITIKTKSIFKNKEISFKLGEE
FEETTPSGRKSKSTVILDNDSLVQVQDWDGKEATICRRLVDGKMVVESAVNNVTCTRTYQRV


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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