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Report for CCDS41206.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41206.1 Public Mus musculus X Glra2 23 108 98 CCDS HistoryNCBI Gene:237213Re-query CCDS DB by CCDS ID:41206.1Re-query CCDS DB by GeneID:237213See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41206.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058787.8 ENSMUSP00000060827.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058787.8Link to Ensembl Protein Viewer:ENSMUSP00000060827.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000058787Re-query CCDS DB by Protein ID:ENSMUSP00000060827
Original member Current member NCBI NM_001357099.1 NP_001344028.1 Accepted alive Link to Nucleotide Sequence:NM_001357099.1Link to Protein Sequence:NP_001344028.1Re-query CCDS DB by Nucleotide ID:NM_001357099Re-query CCDS DB by Protein ID:NP_001344028Link to BLAST:NP_001344028.1
Original member Current member NCBI NM_183427.5 NP_906272.1 Accepted alive Link to Nucleotide Sequence:NM_183427.5Link to Protein Sequence:NP_906272.1Re-query CCDS DB by Nucleotide ID:NM_183427Re-query CCDS DB by Protein ID:NP_906272Link to BLAST:NP_906272.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344028.1 452 Q7TNC8 452 100% 0 0
NP_906272.1 452 Q7TNC8 452 100% 0 0

Chromosomal Locations for CCDS 41206.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 165130284 165130562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 165183573 165183722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 165252220 165252434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 165254221 165254358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 165257106 165257188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 165281823 165282046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 165289599 165289666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 165324501 165324634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 165326802 165326869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGTACCGGCAGCTAGTGAACATTTTGACAGCCTTGTTTGCATTTTTCTTAGGGACAAACCACTTCAGGG
AAGCTTTCTGCAAAGACCATGACTCCAGGTCTGGAAAACATCCCTCGCAGACCCTATCTCCTTCAGATTT
CTTGGATAAATTAATGGGAAGAACATCAGGATATGATGCAAGAATCAGGCCAAATTTTAAAGGTCCTCCA
GTAAACGTTACTTGCAATATTTTTATCAACAGTTTTGGATCAGTCACAGAAACCACCATGGACTACCGAG
TGAACATTTTTCTGAGACAGCAGTGGAATGATTCACGGCTGGCATACAGTGAGTACCCAGATGATTCCCT
GGATTTGGATCCCTCAATGTTGGATTCGATTTGGAAACCGGATTTGTTCTTTGCCAATGAAAAGGGTGCC
AATTTCCATGATGTCACCACTGACAACAAGTTGTTGCGGATTTCCAAAAATGGCAAAGTGCTCTACAGTA
TTAGACTCACCTTGACTTTATCTTGTCCAATGGACCTGAAGAACTTTCCAATGGATGTCCAGACCTGTAC
AATGCAGCTGGAGAGTTTTGGGTACACCATGAATGACCTGATATTTGAGTGGTTAAGTGATGGTCCAGTA
CAAGTTGCTGAAGGACTCACCTTGCCCCAGTTTATTTTGAAAGAAGAGAAGGAGCTTGGTTATTGCACAA
AGCATTACAACACTGGCAAGTTTACCTGCATTGAGGTCAAGTTTCACCTGGAGCGCCAGATGGGCTACTA
TTTGATCCAGATGTACATCCCCAGCCTGTTGATAGTCATTTTGTCCTGGGTCTCCTTTTGGATAAACATG
GATGCAGCCCCTGCCAGGGTTGCCCTGGGCATCACAACAGTCCTGACAATGACTACACAGAGTTCAGGTT
CCAGGGCATCTCTGCCAAAGGTCTCCTATGTGAAAGCAATTGACATCTGGATGGCGGTATGCCTTCTCTT
TGTGTTTGCTGCCTTACTGGAATATGCAGCAGTGAACTTTGTCTCCAGGCAACATAAGGAGTTCCTTCGT
CTCCGGAGACGACAGAAGAGGCAGAATAAGGAAGAAGATGTTACTCGTGAAAGTCGTTTTAACTTCAGTG
GCTATGGGATGGGTCACTGCCTCCAAATGAAAGATGGCACAGCTGTCAAGGCTACACCTGCCAACCCACT
TCCACAACCCCCCAAAGATGCAGATGCTATCAAGAAGAAGTTTGTGGATCGGGCAAAAAGAATTGACACC
ATATCTCGAGCTGCCTTCCCACTGGCCTTCCTCATTTTCAACATCTTTTACTGGATCACATACAAGATCA
TTCGGCATGAAGATGTCCACAAGAAATAG

Translation (452 aa):
MYRQLVNILTALFAFFLGTNHFREAFCKDHDSRSGKHPSQTLSPSDFLDKLMGRTSGYDARIRPNFKGPP
VNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDLDPSMLDSIWKPDLFFANEKGA
NFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFPMDVQTCTMQLESFGYTMNDLIFEWLSDGPV
QVAEGLTLPQFILKEEKELGYCTKHYNTGKFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINM
DAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLR
LRRRQKRQNKEEDVTRESRFNFSGYGMGHCLQMKDGTAVKATPANPLPQPPKDADAIKKKFVDRAKRIDT
ISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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