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Report for CCDS36255.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36255.1 Public Mus musculus 11 Ccl3 23 108 98 CCDS HistoryNCBI Gene:20302Re-query CCDS DB by CCDS ID:36255.1Re-query CCDS DB by GeneID:20302See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36255.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001008.5 ENSMUSP00000001008.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001008.5Link to Ensembl Protein Viewer:ENSMUSP00000001008.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000001008Re-query CCDS DB by Protein ID:ENSMUSP00000001008
Original member Current member NCBI NM_011337.2 NP_035467.1 Accepted alive Link to Nucleotide Sequence:NM_011337.2Link to Protein Sequence:NP_035467.1Re-query CCDS DB by Nucleotide ID:NM_011337Re-query CCDS DB by Protein ID:NP_035467Link to BLAST:NP_035467.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035467.1 92 P10855 92 100% 0 0

Chromosomal Locations for CCDS 36255.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 83648253 83648343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83648569 83648680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83649202 83649277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (279 nt):
ATGAAGGTCTCCACCACTGCCCTTGCTGTTCTTCTCTGTACCATGACACTCTGCAACCAAGTCTTCTCAG
CGCCATATGGAGCTGACACCCCGACTGCCTGCTGCTTCTCCTACAGCCGGAAGATTCCACGCCAATTCAT
CGTTGACTATTTTGAAACCAGCAGCCTTTGCTCCCAGCCAGGTGTCATTTTCCTGACTAAGAGAAACCGG
CAGATCTGCGCTGACTCCAAAGAGACCTGGGTCCAAGAATACATCACTGACCTGGAACTGAATGCCTGA

Translation (92 aa):
MKVSTTALAVLLCTMTLCNQVFSAPYGADTPTACCFSYSRKIPRQFIVDYFETSSLCSQPGVIFLTKRNR
QICADSKETWVQEYITDLELNA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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