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Report for CCDS38928.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38928.1 Public Mus musculus 4 Fam43b 23 108 98 CCDS HistoryNCBI Gene:625638Re-query CCDS DB by CCDS ID:38928.1Re-query CCDS DB by GeneID:625638See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38928.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105032.3 ENSMUSP00000100649.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105032.3Link to Ensembl Protein Viewer:ENSMUSP00000100649.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105032Re-query CCDS DB by Protein ID:ENSMUSP00000100649
Original member Current member NCBI NM_001081672.2 NP_001075141.1 Accepted alive Link to Nucleotide Sequence:NM_001081672.2Link to Protein Sequence:NP_001075141.1Re-query CCDS DB by Nucleotide ID:NM_001081672Re-query CCDS DB by Protein ID:NP_001075141Link to BLAST:NP_001075141.1

Chromosomal Locations for CCDS 38928.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 138395015 138396007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGCTGCCCTGGAGACGGAACAAATTCGTGCTAGTGGAGGACGAGGCCAAGCGCAAGGCGAAGAGCCTGA
GCCCCGGGCTCGCCTACACGTCGCTGCTCTCCAGCTTCCTGCGCTCCTGCCCGGACCTGCTACCGGACTG
GCCGCTGGAGCGTCTGGGCCGCGTGTTCCGCAGCCGGCGCCAGAAAGTGGAGCTTAACAAGGAGGACCCC
ACCTACACCGTGTGGTACCTGGGCAACGCCGTCACCCTGCATGCCAAGGGCGACGGCTGCACCGACGACG
CTGTGGGCAGGATTTGGGCGCGCTGCGGGCCGGGAGGGGGCACGAAGATGAAACTGACCCTGGGTCCGCA
CGGCATCCGCATGCAGCCGAGCGAACGCAGCTCCGGGGCTTCGGGGGGCCGCAGACCGGCGCACGCCTAC
CTGCTGCCGCGCATCACCTACTGCGCGGCGGATGGGCGCCACCCGCGAGTCTTCACCTGGGTCTACCGCC
ACCAGGCACGCCACAAGGCCGTGGTGCTGCGCTGCCACGCTGTGTTGCTGGCGCGGGCGCACAAGGCGCG
CTCCCTGGCCCGCCTGCTCCACCAGACTGCGCTGGCGGCCTTCAGCGACTTCAAGCGGCTGCAGCGCCAG
AGCGATGCGCGCCACGTGCGCCAGCAGCATCTCCGTGCGGGGGGCGCCGCCGCCTCGGTACCCCGGGCTC
CATTGCGCCGCCTGCTCAACGCCAAGTGCGCTTACCGGCCTCCGCCGGGCGAGCGCGGTCGCGGAGCTCC
GCGGCTCAGCAGCATCCAGGAGGAGGATGAGGAGGAGGATGCGGAGGAGGAGGACACCCGGGATAGCGAG
GAAGGAGCCCTGCAGCGCGAACGGCCCGAGGTGCTCAGCCTGGCCCGGGAGCTGAGGACGTGCAGCCTGC
GGGGTGCCCCGGCACCTCCGCCACCAGCGCAGCCCCGCCGCTGGAAAGCCGGCTCCAGGGAGCGGGCGGG
CCAGGCGCGCTGA

Translation (330 aa):
MLPWRRNKFVLVEDEAKRKAKSLSPGLAYTSLLSSFLRSCPDLLPDWPLERLGRVFRSRRQKVELNKEDP
TYTVWYLGNAVTLHAKGDGCTDDAVGRIWARCGPGGGTKMKLTLGPHGIRMQPSERSSGASGGRRPAHAY
LLPRITYCAADGRHPRVFTWVYRHQARHKAVVLRCHAVLLARAHKARSLARLLHQTALAAFSDFKRLQRQ
SDARHVRQQHLRAGGAAASVPRAPLRRLLNAKCAYRPPPGERGRGAPRLSSIQEEDEEEDAEEEDTRDSE
EGALQRERPEVLSLARELRTCSLRGAPAPPPPAQPRRWKAGSRERAGQAR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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