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Report for CCDS27775.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27775.1 Public Mus musculus 15 Nell2 23 108 98 CCDS HistoryNCBI Gene:54003Re-query CCDS DB by CCDS ID:27775.1Re-query CCDS DB by GeneID:54003See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27775.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075275.2 ENSMUSP00000074751.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075275.2Link to Ensembl Protein Viewer:ENSMUSP00000074751.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000075275Re-query CCDS DB by Protein ID:ENSMUSP00000074751
Original member Current member EBI ENSMUST00000166170.8 ENSMUSP00000131665.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166170.8Link to Ensembl Protein Viewer:ENSMUSP00000131665.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166170Re-query CCDS DB by Protein ID:ENSMUSP00000131665
Original member Current member NCBI NM_001289653.1 NP_001276582.1 Accepted alive Link to Nucleotide Sequence:NM_001289653.1Link to Protein Sequence:NP_001276582.1Re-query CCDS DB by Nucleotide ID:NM_001289653Re-query CCDS DB by Protein ID:NP_001276582Link to BLAST:NP_001276582.1
Original member Current member NCBI NM_001356950.1 NP_001343879.1 Accepted alive Link to Nucleotide Sequence:NM_001356950.1Link to Protein Sequence:NP_001343879.1Re-query CCDS DB by Nucleotide ID:NM_001356950Re-query CCDS DB by Protein ID:NP_001343879Link to BLAST:NP_001343879.1
Original member Current member NCBI NM_001356951.1 NP_001343880.1 Accepted alive Link to Nucleotide Sequence:NM_001356951.1Link to Protein Sequence:NP_001343880.1Re-query CCDS DB by Nucleotide ID:NM_001356951Re-query CCDS DB by Protein ID:NP_001343880Link to BLAST:NP_001343880.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276582.1 819 Q61220 819 100% 0 0
NP_001343879.1 819 Q61220 819 100% 0 0
NP_001343880.1 819 Q61220 819 100% 0 0

Chromosomal Locations for CCDS 27775.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 95220104 95220154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 95229084 95229308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 95231297 95231473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 95232484 95232677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 95241537 95241677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 95296159 95296254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 95298858 95298980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 95346762 95346887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 95374728 95374856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 95383626 95383728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 95385065 95385156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 95429878 95429980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 95431539 95431667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 95432595 95432677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 95432851 95432923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 95435062 95435158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 95435257 95435430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 95473509 95473659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 95527277 95527405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 95527801 95527864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2460 nt):
ATGCACGCCATGGAATCCCGGGTGTTACTGAGAACGTTCTGCGTGATCCTCGGGCTTGGAGCGGTTTGGG
GGCTTGGTGTGGACCCCTCCCTACAGATTGACGTCTTAACAGAGTTAGAACTTGGGGAGTCTACAGATGG
AGTGCGCCAAGTCCCGGGACTGCATAATGGGACGAAAGCCTTCCTCTTCCAAGAGTCCCCCAGAAGCATA
AAGGCATCCACTGCTACAGCTGAGCGGTTTTTCCAGAAGCTGAGAAATAAACACGAGTTCACAATCTTGG
TGACCCTGAAACAGATCCACTTAAATTCGGGAGTTATCCTCTCCATCCACCACTTGGATCACAGGTACCT
GGAACTGGAAAGCAGTGGCCATCGGAATGAGATCAGACTCCACTACCGCTCTGGCACTCACCGTCCCCAC
ACGGAAGTGTTTCCTTATATTTTGGCTGATGCCAAGTGGCACAAGCTCTCCTTAGCCTTCAGTGCCTCTC
ACTTAATTTTACACATCGACTGCAATAAGATCTATGAACGAGTGGTGGAAATGCCTTCAACAGACTTGCC
TCTGGGCACCACATTTTGGTTGGGACAGAGAAATAATGCACATGGCTATTTTAAGGGAATAATGCAGGAT
GTGCACGTTCTTGTCATGCCTCAGGGCTTCATTGCTCAGTGCCCGGACCTTAATCGAACCTGTCCAACAT
GCAACGACTTCCATGGGCTTGTGCAGAAAATCATGGAGCTGCAGGACATTTTATCAAAGACGTCAGCCAA
GTTGTCCAGAGCTGAACAAAGAATGAACAGGCTGGATCAGTGCTACTGTGAGCGGACATGCACTGTGAAG
GGAACCACCTACCGAGAGTCTGAGTCCTGGACAGACGGCTGTAAGAACTGCACATGCTTGAACGGGACCA
TCCAGTGCGAGACTCTGGTCTGCCCTGCTCCTGACTGCCCTCCTAAATCGGCCCCTGCGTATGTGGATGG
CAAGTGCTGTAAGGAGTGCAAATCAACCTGCCAGTTCCAGGGACGGAGCTACTTTGAGGGAGAAAGGAAC
ACGGTATACTCATCTTCTGGAATGTGTGTCTTATATGAATGCAAGGATCAGACCATGAAGCTTGTTGAGA
ACATTGGCTGCCCACCCTTAGATTGTCCCGAGTCTCATCAGATTGCCTTGTCTCACAGCTGCTGCAAGGT
TTGTAAAGGTTATGACTTCTGTTCTGAGAAGCATACCTGCATGGAGAACTCGGTCTGCAGGAACCTGAAC
GACAGGGCTGTGTGCAGCTGCAGGGATGGTTTTCGGGCTCTCCGAGAGGACAACGCCTACTGTGAAGACA
TTGACGAGTGTGCAGAAGGGCGCCATTACTGCCGTGAGAACACCATGTGTGTGAATACACCTGGTTCTTT
CATGTGTATCTGCAAAACTGGGTACATCAGGATCGACGATTACTCATGTACAGAACATGATGAGTGTCTC
ACAAACCAGCACAATTGTGATGAAAACGCTTTGTGCTTTAACACTGTTGGAGGACACAACTGTGTCTGCA
AGCCTGGCTACACCGGGAATGGAACCACGTGCAAAGCTTTCTGCAAAGATGGCTGTAGAAACGGAGGAGC
GTGCATTGCTGCCAATGTGTGTGCCTGCCCACAAGGCTTCACGGGACCCAGCTGTGAGACAGACATTGAC
GAGTGCTCTGAGGGCTTTGTTCAGTGTGACAGCCGTGCCAACTGCATCAACCTGCCTGGGTGGTATCACT
GTGAGTGCAGAGACGGCTACCATGACAATGGGATGTTTGCGCCAGGCGGAGAATCCTGTGAAGATATTGA
CGAATGCGGGACTGGGAGGCACAGCTGCACCAACGACACCATTTGCTTCAACTTGGACGGGGGATACGAT
TGCCGGTGTCCCCATGGGAAGAACTGCACTGGGGACTGCGTGCACGAGGGGAAAGTGAAGCACACCGGCC
AGATCTGGGTGCTGGAAAACGACAGGTGCTCCGTGTGTTCCTGCCAGACTGGGTTTGTCATGTGTCGACG
GATGGTCTGCGACTGCGAAAACCCCACAGTTGACCTTTCCTGCTGCCCTGAGTGTGACCCAAGGCTGAGC
AGTCAGTGCCTGCATCAAAACGGGGAAACCGTGTACAACAGCGGCGACACCTGGGTCCAGGATTGCCGTC
AGTGCCGCTGCTTGCAAGGAGAAGTTGACTGTTGGCCCCTGGCTTGCCCAGAGGTAGAATGTGAATTTAG
CGTCCTTCCTGAGAACGAGTGCTGCCCACGCTGTGTCACCGATCCTTGTCAGGCCGACACCATCCGCAAT
GACATCACCAAAACCTGCCTGGACGAGATGAACGTGGTTCGCTTCACCGGGTCTTCCTGGATCAAGCACG
GCACGGAGTGTACCCTCTGCCAGTGCAAGAATGGCCATTTGTGCTGCTCAGTGGATCCACAGTGCCTTCA
GGAGCTGTGA

Translation (819 aa):
MHAMESRVLLRTFCVILGLGAVWGLGVDPSLQIDVLTELELGESTDGVRQVPGLHNGTKAFLFQESPRSI
KASTATAERFFQKLRNKHEFTILVTLKQIHLNSGVILSIHHLDHRYLELESSGHRNEIRLHYRSGTHRPH
TEVFPYILADAKWHKLSLAFSASHLILHIDCNKIYERVVEMPSTDLPLGTTFWLGQRNNAHGYFKGIMQD
VHVLVMPQGFIAQCPDLNRTCPTCNDFHGLVQKIMELQDILSKTSAKLSRAEQRMNRLDQCYCERTCTVK
GTTYRESESWTDGCKNCTCLNGTIQCETLVCPAPDCPPKSAPAYVDGKCCKECKSTCQFQGRSYFEGERN
TVYSSSGMCVLYECKDQTMKLVENIGCPPLDCPESHQIALSHSCCKVCKGYDFCSEKHTCMENSVCRNLN
DRAVCSCRDGFRALREDNAYCEDIDECAEGRHYCRENTMCVNTPGSFMCICKTGYIRIDDYSCTEHDECL
TNQHNCDENALCFNTVGGHNCVCKPGYTGNGTTCKAFCKDGCRNGGACIAANVCACPQGFTGPSCETDID
ECSEGFVQCDSRANCINLPGWYHCECRDGYHDNGMFAPGGESCEDIDECGTGRHSCTNDTICFNLDGGYD
CRCPHGKNCTGDCVHEGKVKHTGQIWVLENDRCSVCSCQTGFVMCRRMVCDCENPTVDLSCCPECDPRLS
SQCLHQNGETVYNSGDTWVQDCRQCRCLQGEVDCWPLACPEVECEFSVLPENECCPRCVTDPCQADTIRN
DITKTCLDEMNVVRFTGSSWIKHGTECTLCQCKNGHLCCSVDPQCLQEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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