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Report for CCDS18645.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18645.1 Public Mus musculus 4 Thrap3 23 108 98 CCDS HistoryNCBI Gene:230753Re-query CCDS DB by CCDS ID:18645.1Re-query CCDS DB by GeneID:230753See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18645.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080919.11 ENSMUSP00000079722.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080919.11Link to Ensembl Protein Viewer:ENSMUSP00000079722.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000080919Re-query CCDS DB by Protein ID:ENSMUSP00000079722
Original member Current member NCBI NM_001356455.1 NP_001343384.1 Accepted alive Link to Nucleotide Sequence:NM_001356455.1Link to Protein Sequence:NP_001343384.1Re-query CCDS DB by Nucleotide ID:NM_001356455Re-query CCDS DB by Protein ID:NP_001343384Link to BLAST:NP_001343384.1
Original member Current member NCBI NM_001356456.1 NP_001343385.1 Accepted alive Link to Nucleotide Sequence:NM_001356456.1Link to Protein Sequence:NP_001343385.1Re-query CCDS DB by Nucleotide ID:NM_001356456Re-query CCDS DB by Protein ID:NP_001343385Link to BLAST:NP_001343385.1
Original member Current member NCBI NM_146153.3 NP_666265.3 Accepted alive Link to Nucleotide Sequence:NM_146153.3Link to Protein Sequence:NP_666265.3Re-query CCDS DB by Nucleotide ID:NM_146153Re-query CCDS DB by Protein ID:NP_666265Link to BLAST:NP_666265.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343384.1 951 Q569Z6 951 100% 0 0
NP_001343385.1 951 Q569Z6 951 100% 0 0
NP_666265.3 951 Q569Z6 951 100% 0 0

Chromosomal Locations for CCDS 18645.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 126165396 126165617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126166931 126167074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126167470 126167665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126171694 126171881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126173444 126173528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126175336 126175447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126176184 126176356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126177862 126178557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126179912 126180814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126186435 126186571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2856 nt):
ATGTCAAAAACAAACAAATCCAAGTCTGGGTCTCGCTCTTCTCGCTCAAGATCTGCATCCAGATCTCGGT
CTCGTTCGTTTTCAAAGTCTCGGTCCCGAAGCCGATCTGTCTCTCGTTCAAGGAAGCGCAGGCTGAGTTC
TAGGTCTCGTTCCAGATCATATTCTCCAGCTCATAACAGAGAAAGGAATCACCCCAGAGTGTATCAGAAT
CGAGATTTCCGAGGTCATAACAGAGGCTACAGGAGGCCCTATTACTTCCGTGGGCGAAACCGAGGCTTTT
ATCCATGGGGCCAGTATAACCGAGGTGGCTATGGAAACTACCGTTCCAATTGGCAGAACTACCGGCAAGC
ATACAGCCCTCGTCGGGGCCGTTCTCGATCCCGGTCCCCAAAGAGAAGGTCCCCTTCACCACGGTCCAGG
AGCCATTCTAGGAACTCTGACAAGTCATCCTCTGACAGGTCAAGACGCTCCTCATCCTCCCGGTCGTCCT
CCAACCACAGCAGAGTTGAGTCGTCTAAGCGAAAGTCTACAAAAGAGAAAAAGTCCTCTTCCAAGGATAG
CCGGCCATCTCAGGCAGCTGGTGATAACCAGGGAGATGAGGCTAAGGAGCAGACATTCTCTGGAGGCACC
TCTCAAGATATAAAAGGGTCTGAGAGCTCAAAGCCATGGCCAGATGCCACCACCTATGGCGCCGGTTCTG
CATCACGGGCCTCGGTTTCTGATCTGAGTCCCCGGGAGAGAAGCCCAGCTCTCAAAAGCCCCCTCCAGTC
TGTGGTGGTTAGGCGCAGGTCACCACGCCCTAGCCCTGTGCCAAAACCCAGTCCTCCACTTTCTAATGCG
TCCCAGATGGGCTCGTCTATGTCAGGGGGTGCTGGGTATCAGTCTGGAGCACACCAAGGCCAGTTCGACC
ATGGCTCTGGGTCTTTGAGTCCATCCAAAAAGAGCCCTGTGGGTAAGAGTCCACCAGCTACTGGCTCTGC
ATATGGCTCATCTCAGAAAGAGGAGAGTGCTGCTTCGGGAGGGGCAGCATATTCAAAAAGGTATCTGGAG
GAGCAGAAGACTGAGAATGGGAAGGATAAGGAGCAGAAACAAACAAATGCCGATAAGGAGAAGCTGAAGG
AGAAAGGGGGCTTCTCTGATGCTGATGTCAAAATGAAATCTGATCCATTTGCTCCCAAGACGGACTCTGA
GAAGCCCTTCCGAGGCAGCCAGTCGCCCAAAAGGTATAAGCTTCGGGATGACTTTGAGAAAAAGATGGCT
GACTTCCACAAGGAGGAGCTGGATGAGCACGATAAGGACAAAAGTAAGGGAAGGAAGGAACCCGAGTTTG
ATGATGAGCCCAAATTTATGTCGAAAGTCATAGCCGGTGCAAGCAAAAACCAGGAGGAAGAGAAGTCAGG
CAAGTGGGAGAGCCTGCACACAGGGAAGGAAAAGCAGAGGAAGGCAGAGGAAATGGAGGATGAGCCTTTC
ACAGAGAGATCCCGAAAGGAGGAGCGTGGAGGGTCCAAGAGGAGTGAAAGTGGGCACAGGGGCTTTGTGC
CAGAAAAGAATTTCCGGGTGACTGCGTACAAGGCGGTCCAGGAGAAAAGTTCATCGCCGCCCCCAAGGAA
GACCTCTGAGAGCCGTGACAAGCTGGGAAGCAAAGGAGACTTTTCCTCAGGGAAGTCTTCCTTTTCCATT
ACCCGGGAGGCCCAAGTCAATGTCCGGATGGACTCCTTCGATGAGGACCTTGCACGACCTAGTGGTTTAT
TGGCTCAGGAGCGAAAGCTCTGTCGGGATCTAGTCCATAGCAACAAAAAGGAGCAGGAGTTCCGTTCCAT
TTTCCAGCACATACAGTCGGCTCAGTCTCAGCGTAGCCCCTCAGAACTGTTTGCTCAGCACATAGTGACC
ATTGTTCATCATGTTAAAGAGCATCACTTTGGATCCTCTGGAATGACATTGCATGAACGCTTTACTAAAT
ACCTAAAGAGAGGAAATGAACAAGAAGCAGCTAAAAATAAGAAAAGCCCAGAGATACACAGGAGGATAGA
CATTTCCCCCAGTACATTCAGAAAGCATGGTTTGACTCATGAGGAATTGAAAAGTCCACGGGAACCTGGC
TACAAGGCTGAGGGAAAATACAAAGATGATCCTGTTGATCTTCGCCTTGATATTGAACGTCGTAAAAAAC
ATAAGGAGAGAGATCTTAAGCGAGGTAAATCAAGAGAGTCAGTGGATTCCAGAGACTCTAGCCACTCAAG
AGAAAGATCAACTGAAAAGACAGAGAAAACCCACAAAGGATCAAAGAAGCAGAAGAAGCACCGCAGAGCA
AGAGACCGGTCCAGGTCCTCCTCCTCCTCCTCCCAGTCCTCCCATTCCTACAAAGCAGAGGAGTACCCTG
AGGAGGCAGAAGAGAGGGAGGAGAGCACCTCAGGTTTCGACAAATCCAGATTGGGGACCAAAGACTTCGT
GGGTCCGAATGAAAGAGGCGGCAGAGCTCGGGGAACCTTTCAATTTCGTGCAAGAGGGAGAGGATGGGGC
AGAGGAAACTATTCTGGTAACAATAACAACAACAGCAACAATGATTTTCAAAAGAGAAGCCGGGAAGAAG
AGTGGGATCCAGAGTACACGCCCAAGAGCAAGAAGTATTACTTGCATGACGACCGGGAAGGCGAGGGCAG
CGACAAGTGGATGGGCCGAGGCCGAGGCCGAGGAGCCTTTCCCCGGGGGCGGGGCCGGTTCATGTTCCGG
AAGTCCAGTACCAGCCCCAAGTGGGCCCATGACAAGTTCAGTGGGGAGGAGGGAGAGATAGAAGACGACG
AGAGTGGGACAGAGAACAGAGAAGAGAAGGACAGTTTACAGCCCTCAGCTGAGTAG

Translation (951 aa):
MSKTNKSKSGSRSSRSRSASRSRSRSFSKSRSRSRSVSRSRKRRLSSRSRSRSYSPAHNRERNHPRVYQN
RDFRGHNRGYRRPYYFRGRNRGFYPWGQYNRGGYGNYRSNWQNYRQAYSPRRGRSRSRSPKRRSPSPRSR
SHSRNSDKSSSDRSRRSSSSRSSSNHSRVESSKRKSTKEKKSSSKDSRPSQAAGDNQGDEAKEQTFSGGT
SQDIKGSESSKPWPDATTYGAGSASRASVSDLSPRERSPALKSPLQSVVVRRRSPRPSPVPKPSPPLSNA
SQMGSSMSGGAGYQSGAHQGQFDHGSGSLSPSKKSPVGKSPPATGSAYGSSQKEESAASGGAAYSKRYLE
EQKTENGKDKEQKQTNADKEKLKEKGGFSDADVKMKSDPFAPKTDSEKPFRGSQSPKRYKLRDDFEKKMA
DFHKEELDEHDKDKSKGRKEPEFDDEPKFMSKVIAGASKNQEEEKSGKWESLHTGKEKQRKAEEMEDEPF
TERSRKEERGGSKRSESGHRGFVPEKNFRVTAYKAVQEKSSSPPPRKTSESRDKLGSKGDFSSGKSSFSI
TREAQVNVRMDSFDEDLARPSGLLAQERKLCRDLVHSNKKEQEFRSIFQHIQSAQSQRSPSELFAQHIVT
IVHHVKEHHFGSSGMTLHERFTKYLKRGNEQEAAKNKKSPEIHRRIDISPSTFRKHGLTHEELKSPREPG
YKAEGKYKDDPVDLRLDIERRKKHKERDLKRGKSRESVDSRDSSHSRERSTEKTEKTHKGSKKQKKHRRA
RDRSRSSSSSSQSSHSYKAEEYPEEAEEREESTSGFDKSRLGTKDFVGPNERGGRARGTFQFRARGRGWG
RGNYSGNNNNNSNNDFQKRSREEEWDPEYTPKSKKYYLHDDREGEGSDKWMGRGRGRGAFPRGRGRFMFR
KSSTSPKWAHDKFSGEEGEIEDDESGTENREEKDSLQPSAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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