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Report for CCDS53232.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53232.1 Public Mus musculus X Cldn34b2 23 108 98 CCDS HistoryNCBI Gene:73347Re-query CCDS DB by CCDS ID:53232.1Re-query CCDS DB by GeneID:73347See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53232.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076671.3 ENSMUSP00000075967.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076671.3Link to Ensembl Protein Viewer:ENSMUSP00000075967.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000076671Re-query CCDS DB by Protein ID:ENSMUSP00000075967
Original member Current member NCBI NM_001081671.2 NP_001075140.1 Accepted alive Link to Nucleotide Sequence:NM_001081671.2Link to Protein Sequence:NP_001075140.1Re-query CCDS DB by Nucleotide ID:NM_001081671Re-query CCDS DB by Protein ID:NP_001075140Link to BLAST:NP_001075140.1
Original member Current member NCBI NM_028511.1 NP_082787.1 Accepted alive Link to Nucleotide Sequence:NM_028511.1Link to Protein Sequence:NP_082787.1Re-query CCDS DB by Nucleotide ID:NM_028511Re-query CCDS DB by Protein ID:NP_082787Link to BLAST:NP_082787.1

Chromosomal Locations for CCDS 53232.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 155125201 155125830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (630 nt):
ATGCCGTTGAAAAAGTGCCATGGCCAAATGGGAGGTTTTGCTTTGACCACTGTGGCCTGGCTACTCTGCT
GCATATCCACAGGCCTCCCTCAGTGGCAAGTGTGGCACTATGAAGATCCTGTGGTCCTCAAGCCTACAGT
GGCTTTAGTGGGCATGTGGAGAGCCTGCGTTTTCCACACCGACAGAAACTCCAGCAACACCAGAGTATGT
TACCAATACAACTACGATGGCTCCATTCCTTTGTATATTCGAGGAAACCAGCACTTGCTGCTGGTTTCTA
GCTTTCTTGGGCTTTTTGGGAAAATCACTACCATTATTGCTCTTTCGAATGTGCATATGGGAAGAGTACG
GAGGAATGCCACCTGCAATCCTTTCAGACTTTCAGGCATACTGAACATCATTGCTAGCAGCTTTCTTTAC
CTTGCTGTTTTGTTCAATTACATAGCCATCATGAGCAAATGGGGGATTGCCTTCCCACCATCTTTCAATT
TGCCTTTCCAGCCAGACACTCGGAAGATGGGAAGTGCCATGGCTTTGGCAATTATAGCTGCAGTTTTCTT
TCTACTAAGTGGCACAATTTGCCTTTCTTCAAATTTAAACATAGACAAGACGCCCCGTTCCAAAATGTAA

Translation (209 aa):
MPLKKCHGQMGGFALTTVAWLLCCISTGLPQWQVWHYEDPVVLKPTVALVGMWRACVFHTDRNSSNTRVC
YQYNYDGSIPLYIRGNQHLLLVSSFLGLFGKITTIIALSNVHMGRVRRNATCNPFRLSGILNIIASSFLY
LAVLFNYIAIMSKWGIAFPPSFNLPFQPDTRKMGSAMALAIIAAVFFLLSGTICLSSNLNIDKTPRSKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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