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Report for CCDS17336.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17336.1 Public Mus musculus 3 Noct 23 108 98 CCDS HistoryNCBI Gene:12457Re-query CCDS DB by CCDS ID:17336.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17336.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023849.14 ENSMUSP00000023849.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023849.14Link to Ensembl Protein Viewer:ENSMUSP00000023849.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000023849Re-query CCDS DB by Protein ID:ENSMUSP00000023849
Original member Current member EBI ENSMUST00000167780.1 ENSMUSP00000130347.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167780.1Link to Ensembl Protein Viewer:ENSMUSP00000130347.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167780Re-query CCDS DB by Protein ID:ENSMUSP00000130347
Original member Current member NCBI NM_009834.2 NP_033964.1 Accepted alive Link to Nucleotide Sequence:NM_009834.2Link to Protein Sequence:NP_033964.1Re-query CCDS DB by Nucleotide ID:NM_009834Re-query CCDS DB by Protein ID:NP_033964Link to BLAST:NP_033964.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033964.1 429 O35710-1 429 100% 0 0

Chromosomal Locations for CCDS 17336.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 51225104 51225287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51247805 51248074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51249697 51250532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGTATCAGAGCCCGCGGCGGCTCTGCTCGGCCCTGCTGCTCAGGGACGCCCCCGGCCTGCGCCGCACAC
TCGTGCCCGGCCCGCGCCGAACGCTCGCCCCGCCGGTGCTCGGATCTCGGCCCAAGTCCCCGCAACTGCA
GGCGGCGGCGGCCTCGGGCGCCGCGAGGTCGCGTCCCCGAACAGTGAGTTCCATGGGAAACGGCACCAGT
CGACTCTACAGTGCTCTCGCCAAGACCGTCAACAGCAGTGCAGCTGCTCAGCACCCGGAGTACTTGGTGT
CAACTGACCCCGAACATCTGGAGCCCATCGATCCTAAGGAACTTCTGGAGGAATGCAGGGCTGTTCTGCA
CACTCGGCCACCCCGCTACCAGCGGGATTTTGTGGACCTGAGGACAGATTGCTCCAGCAGCCACTCTCCC
ATTCGCGTCATGCAGTGGAACATCCTCGCCCAAGCTCTCGGAGAAGGCAAAGACAACTTTGTGCAGTGCC
CCGTGGAAGCGCTCAAATGGGAAGAGAGGAAGTGCCTGATCCTGGAGGAGATCCTGGCTTACCAGCCAGA
CATACTGTGCCTCCAGGAAGTGGACCACTACTTTGACACCTTCCAGCCACTCCTCAGTAGACTGGGCTAC
CAAGGCACGTTTTTCCCCAAGCCCTGGTCACCATGTCTAGATGTGGAACACAACAACGGTCCAGATGGCT
GTGCCTTATTTTTTCTCCAAAACCGATTCAAGCTTATCAGCAGCACCAATATTAGGCTGACAGCCATGAC
CCTAAAAACCAATCAGGTGGCCATCGCACAGACCCTGGAGTGCAAGGAGTCTGGGCGACAGTTCTGCATT
GCTGTCACCCACTTAAAAGCCCGCACTGGCTGGGAGCGGTTCCGGTCAGCTCAGGGCTGTGACCTCCTCC
AGAACCTGCAGAACATCACCCAGGGAGCAAAGATCCCCCTGATCGTCTGCGGGGACTTCAACGCAGAGCC
AACCGAAGAGGTCTACAAACACTTTGCGTCCTCCAGCCTCAACCTCAACAGCGCCTACAAGCTGCTGAGT
CCCGATGGACAGTCGGAGCCTCCCTACACAACCTGGAAGATCCGGACCTCAGGCGAGTGTCGCCACACGC
TGGACTATATCTGGTACTCCAGACATGCTCTGAGTGTCACGTCCGCCCTGGATCTACTCACTGAAGAACA
GATTGGGCCCAACCGGCTCCCATCCTTCCATTACCCCTCGGACCACCTGTCCCTGGTGTGTGACTTCAGC
TTTAACGAGGAGCCCCATGAGCTCTTTTAA

Translation (429 aa):
MYQSPRRLCSALLLRDAPGLRRTLVPGPRRTLAPPVLGSRPKSPQLQAAAASGAARSRPRTVSSMGNGTS
RLYSALAKTVNSSAAAQHPEYLVSTDPEHLEPIDPKELLEECRAVLHTRPPRYQRDFVDLRTDCSSSHSP
IRVMQWNILAQALGEGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEVDHYFDTFQPLLSRLGY
QGTFFPKPWSPCLDVEHNNGPDGCALFFLQNRFKLISSTNIRLTAMTLKTNQVAIAQTLECKESGRQFCI
AVTHLKARTGWERFRSAQGCDLLQNLQNITQGAKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLS
PDGQSEPPYTTWKIRTSGECRHTLDYIWYSRHALSVTSALDLLTEEQIGPNRLPSFHYPSDHLSLVCDFS
FNEEPHELF


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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