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Report for CCDS51047.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51047.1 Public Mus musculus 3 Clcc1 23 108 98 CCDS HistoryNCBI Gene:229725Re-query CCDS DB by CCDS ID:51047.1Re-query CCDS DB by GeneID:229725See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51047.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106613.1 ENSMUSP00000102224.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106613.1Link to Ensembl Protein Viewer:ENSMUSP00000102224.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106613Re-query CCDS DB by Protein ID:ENSMUSP00000102224
Original member Current member NCBI NM_001177770.2 NP_001171241.1 Accepted alive Link to Nucleotide Sequence:NM_001177770.2Link to Protein Sequence:NP_001171241.1Re-query CCDS DB by Nucleotide ID:NM_001177770Re-query CCDS DB by Protein ID:NP_001171241Link to BLAST:NP_001171241.1

Chromosomal Locations for CCDS 51047.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 108654343 108654345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108661355 108661495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108661932 108662033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108663524 108663631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108667963 108668184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108668699 108668839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108670902 108670995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108672820 108672917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108673281 108673427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108674637 108674963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108676685 108676936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1635 nt):
ATGGCCTTATTCAGGATGCTGTGTCGGCTGCTCCTTTGTGAATGTCTGTTGCTGATAACGGGTTATGCTC
ATGATGACGACTGGATTGACCCAACAGATATGCTTAACTATGACGCTGCTTCAGGAACGATGAGGAAATC
TCAGGTGAGGTCTGGAACATCAGAGAAGAAGGAAGTGAGCCCTGACTCGTCAGAAGCCGAGGAACTGTCA
GACTGTTTGCACAGACTGGATTCTTTAACTCACAAGGTTGATAGTTGTGAAAAGAAGAAAATGAAAGATT
ATGAAAGTCAAAGTAATCCTGTTTTCAGGAGATATCTAAATAAGATTTTAATTGAAGCTGGCAAGCTTGG
ACTCCCTGATGAGAACAAAGTAGAGATGCGTTACGATGCTGAGATTCTCCTGAGCAGACAGACACTGTTG
GAGATTCAGAAGTTCCTCAGCGGAGAGGAGTGGAAGCCCGGAGCCCTGGACGACGCACTAAGTGACATTT
TAATCAATTTTAAGTGCCATGATTCAGAAGCATGGAAGTGGCAGTTTGAAGATTATTTTGGAGTAGATCC
ATATAATGTGTTTATGGTTCTCTTGTGTCTGCTCTGCCTTGTGGTGCTGGTGGCTACAGAGCTGTGGACT
TATGTTCGCTGGTACACACAGATGAAACGGATTTTCATCATCAGCTTTCTCTTGAGTTTAGCATGGAATT
GGATATATCTGTATAAGATGGCTTTTGCTCAGCATCAGGCTAACATTGCTGGGATGGAGCCTTTCGACAA
TTTATGTGCTAAGAAGATGGATTGGACTGGAAGTCTCTGGGAATGGTTTACAAGTTCATGGACCTATAAG
GATGACCCATGCCAAAAGTACTATGAGCTCCTAATAGTCAACCCTATTTGGTTGGTTCCACCAACAAAGG
CTCTGGCGATTACATTCACTAACTTTGTAACGGAACCATTAAAGCACATTGGAAAAGGAGCAGGTGAATT
CATTAAAGCGCTCATGAAGGAGATTCCAGTGTTACTTCAGATTCCGGTGCTGGCGATCCTGGCGCTGGCT
GTCCTGAGCTTCTGCTATGGTGCTGGAAGGTCAGTTCCTATGCTGAGACACTTCGGTGGTCCTGACAGAG
AACCTCCCCGAGCACTTGAGCCAGATGACAGAAGACGACAGAAGGGACTTGACTATAGACTCCATGGTGG
AGCAGGTGATGCAGATTTCTCTTACAGGGGCCCAGCTGGCTCCATCGAGCAAGGCCCTTATGACAAAATG
CATGCGAGTAAGAGAGATGCTTTGAGACAGAGATTTCACTCTGGCAACAAGAGCCCTGAAGTGCTCCGGG
CATTTGACTTACCTGACACAGAGGCACAAGAACATCCAGAAGTGGTCCCCAGCCATAAATCACCCATTAT
GAACACAAACCTTGAGACTGGTGAACTCCCAGGAGAAAGCACCCCGACAGAATACAGCCAGTCTGCCAAG
GATGTCTCTGGCCAAGTTCCCAGCGCTGGCAAAAGCTCACCCACAGTGGACAAGGCCCAGCTGAAGACAG
ACTCCGAGTGCAGCCCACCAGGAGGCTGCCCACCCAGCAAGGAAGCTGCAGTGGCAGCACACGGGACTGA
ACCTGTCAGCAGCCCATGTGGCTAA

Translation (544 aa):
MALFRMLCRLLLCECLLLITGYAHDDDWIDPTDMLNYDAASGTMRKSQVRSGTSEKKEVSPDSSEAEELS
DCLHRLDSLTHKVDSCEKKKMKDYESQSNPVFRRYLNKILIEAGKLGLPDENKVEMRYDAEILLSRQTLL
EIQKFLSGEEWKPGALDDALSDILINFKCHDSEAWKWQFEDYFGVDPYNVFMVLLCLLCLVVLVATELWT
YVRWYTQMKRIFIISFLLSLAWNWIYLYKMAFAQHQANIAGMEPFDNLCAKKMDWTGSLWEWFTSSWTYK
DDPCQKYYELLIVNPIWLVPPTKALAITFTNFVTEPLKHIGKGAGEFIKALMKEIPVLLQIPVLAILALA
VLSFCYGAGRSVPMLRHFGGPDREPPRALEPDDRRRQKGLDYRLHGGAGDADFSYRGPAGSIEQGPYDKM
HASKRDALRQRFHSGNKSPEVLRAFDLPDTEAQEHPEVVPSHKSPIMNTNLETGELPGESTPTEYSQSAK
DVSGQVPSAGKSSPTVDKAQLKTDSECSPPGGCPPSKEAAVAAHGTEPVSSPCG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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