NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39077.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39077.1 Public Mus musculus 5 Cytl1 23 108 98 CCDS HistoryNCBI Gene:231162Re-query CCDS DB by CCDS ID:39077.1Re-query CCDS DB by GeneID:231162See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39077.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073554.3 ENSMUSP00000073244.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073554.3Link to Ensembl Protein Viewer:ENSMUSP00000073244.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000073554Re-query CCDS DB by Protein ID:ENSMUSP00000073244
Original member Current member NCBI NM_001081106.1 NP_001074575.1 Accepted alive Link to Nucleotide Sequence:NM_001081106.1Link to Protein Sequence:NP_001074575.1Re-query CCDS DB by Nucleotide ID:NM_001081106Re-query CCDS DB by Protein ID:NP_001074575Link to BLAST:NP_001074575.1

Chromosomal Locations for CCDS 39077.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 37735548 37735709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 37737362 37737406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 37737582 37737710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 37739212 37739295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (420 nt):
ATGTCACCAAAGACACTACCTCTGTTGCTGCTGCTGGTGGTGGTGGTGATAGCCTGGCCTCTGGCAGTAC
AGTCCGCGCCCCCCACCTGCTACTCTCGGATGCTGACCCTGAGCCGTGAGATCATGGCAGACTTCCAGAG
CCTGCAGGCTTCAGAGCCTGAGGATTCCTGTGTGAGGTACTTGCCCCGGCTTTACCTGGACATCCATAAC
TACTGTGTGCTGGCCAAGCTGAGAGACTTCGTGGCTTCTCCTCAGTGCTGGAAGATGGCCGAAGTGGACA
CTCTGAAGGACAGAGTGCGGAAGCTGTATACCATCATGAACTCCTTCTGCAGGCGGGACTTGGTATTCCT
CTCAGATGACTGCAGTGCCTTAGAAGACCCAATTCCCGAGGCCACGGGTCCTCCAGACTGGCAGAGCTAA

Translation (139 aa):
MSPKTLPLLLLLVVVVIAWPLAVQSAPPTCYSRMLTLSREIMADFQSLQASEPEDSCVRYLPRLYLDIHN
YCVLAKLRDFVASPQCWKMAEVDTLKDRVRKLYTIMNSFCRRDLVFLSDDCSALEDPIPEATGPPDWQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH