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Report for CCDS59.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59.2 Public Homo sapiens 1 RNF207 24 110 108 CCDS HistoryNCBI Gene:388591Re-query CCDS DB by CCDS ID:59.2Re-query CCDS DB by GeneID:388591See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 59.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377939.5 ENSP00000367173.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377939.5Link to Ensembl Protein Viewer:ENSP00000367173.4Re-query CCDS DB by Nucleotide ID:ENST00000377939Re-query CCDS DB by Protein ID:ENSP00000367173
Original member Current member NCBI NM_207396.3 NP_997279.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_207396.3Link to Protein Sequence:NP_997279.2Re-query CCDS DB by Nucleotide ID:NM_207396Re-query CCDS DB by Protein ID:NP_997279Link to BLAST:NP_997279.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997279.2 634 Q6ZRF8-1 634 100% 0 0

Chromosomal Locations for CCDS 59.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 6206536 6206726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6207379 6207511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6208881 6209025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6209115 6209196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6209268 6209343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6209414 6209539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6209924 6209970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6210223 6210295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6210370 6210438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6210870 6210938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6211021 6211118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6211867 6212053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6212231 6212416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6212682 6212733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6213066 6213183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6218289 6218369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6219236 6219407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1905 nt):
ATGTCGGGAGCTATCTTCGGGCCCCTGGAGGGCCCGAGCTCCCTGGATGCCCCGAGCATCCACCCGCTGG
TGTGCCCGCTGTGCCACGTGCAGTACGAGCGCCCGTGTCTTCTGGACTGTTTCCACGACTTCTGTGCCGG
CTGCCTGCGTGGCCGCGCGACCGACGGCCGCCTCACCTGCCCGCTGTGCCAACACCAGACGGTGCTGAAG
GGTCCCAGCGGGCTCCCGCCGGTGGACCGGCTGCTGCAGTTCCTGGTGGACAGCTCAGGGGATGGCGTGG
AGGCGGTGCGCTGTGCCAACTGTGACCTGGAGTGCAGCGAGCAGGACGTGGAGACCACGTACTTCTGCAA
CACGTGCGGACAGCCCCTATGCGCGCGCTGCCGCGACGAGACGCACCGAGCACGCATGTTCGCGCGCCAC
GACATCGTGGCCCTGGGTCAGCGAAGCCGCGACGTGCCCCAGAAGTGCACGCTGCACGCAGAGCCCTACC
TCTTGTTCTCCACCGACAAGAAGTTGCTGTTGTGCATCCGCTGCTTCCGCGACATGCAGAAGGAGAGCCG
GGCACACTGCGTGGACCTGGAATCGGCTTACGTGCAGGGCTGCGAGCGGCTGGAGCAGGCGGTGCTGGCC
GTGAAGGCCCTGCAGACGGCCACGCGGGAGGCCATCGCGCTGCTGCAGGCCATGGTGGAGGAGGTGCGGC
ACAGCGCCGCCGAGGAGGAGGACGCTATCCACGCCCTCTTCGGCAGCATGCAGGACAGGCTGGCAGAGAG
GAAAGCGCTGCTGCTGCAGGCTGTGCAGAGCCAATACGAAGAGAAGGACAAGGCCTTCAAGGAGCAGCTC
TCTCACTTGGCCACCTTGCTGCCCACCCTGCAGGTCCACCTGGTCATCTGCTCCTCCTTCCTCAGCTTGG
CCAACAAGGCTGAGTTCCTGGACCTGGGCTATGAGCTGATGGAGAGGCTGCAGGGCATCGTCACGCGGCC
GCACCACCTAAGGCCTATTCAGAGCAGCAAGATTGCCAGTGACCACCGAGCTGAATTCGCGCGCTGTCTG
GAGCCACTGCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCTGCAAGTGGTGCTAACACGCTGGCAGGGG
GCTTAGGCCCCAAGGCGCTGACGGGGCCCCACTGCCCCTCCCCAGTAGGAAAGATGTCGGGGTCACCCGT
CCAAAAGCCCACGCTGCACCGGTCCATCAGCACCAAGGTGCTGCTGGCGGAGGGCGAGAACACGCCCTTC
GCAGAGCACTGCCGCCACTATGAGGACTCCTACCGGCACCTGCAGGCAGAGATGCAGAGCCTAAAGGACC
AGGTACAGGAGCTGCACCGAGACCTCACCAAGCACCACTCGCTCATCAAGGCGGAGATCATGGGAGACGT
CCTGCACAAGTCCCTGCAACTGGACGTGCAGATCGCCTCGGAGCACGCCTCCTTAGAGGGCATGAGGGTC
GTCTTCCAGGAGATTTGGGAGGAAGCCTATCAGCGAGTGGCTAATGAGCAGGAGATTTATGAAGCCCAGC
TCCATGACCTTCTCCAGCTGAGGCAGGAGAATGCCTACCTGACCACCATCACCAAGCAGATCACGCCCTA
CGTCCGCTCCATTGCCAAGGTGAAGGAGCGGCTGGAGCCCAGGTTTCAGGCACCCGTGGATGAGCAGTCA
GAGAGTCTACAGAACACGCACGACGACAGCAGGAACAACGCGGCCTCAGCCAGGAATAATCCAGGAAGTG
TCCCGGAAAAGAGAGAGAAGACATCAGAGCCTAAAGGAAACAGCTGGGCTCCGAACGGCCTCTCAGAAGA
GCCTCTACTGAAAAATATGGATCATCACAGATCCAAACAGAAAAATGGGGGCGATGTCCCCACATGGAGG
GAACACCCGACTTAG

Translation (634 aa):
MSGAIFGPLEGPSSLDAPSIHPLVCPLCHVQYERPCLLDCFHDFCAGCLRGRATDGRLTCPLCQHQTVLK
GPSGLPPVDRLLQFLVDSSGDGVEAVRCANCDLECSEQDVETTYFCNTCGQPLCARCRDETHRARMFARH
DIVALGQRSRDVPQKCTLHAEPYLLFSTDKKLLLCIRCFRDMQKESRAHCVDLESAYVQGCERLEQAVLA
VKALQTATREAIALLQAMVEEVRHSAAEEEDAIHALFGSMQDRLAERKALLLQAVQSQYEEKDKAFKEQL
SHLATLLPTLQVHLVICSSFLSLANKAEFLDLGYELMERLQGIVTRPHHLRPIQSSKIASDHRAEFARCL
EPLLLLGPRRVAAAASGANTLAGGLGPKALTGPHCPSPVGKMSGSPVQKPTLHRSISTKVLLAEGENTPF
AEHCRHYEDSYRHLQAEMQSLKDQVQELHRDLTKHHSLIKAEIMGDVLHKSLQLDVQIASEHASLEGMRV
VFQEIWEEAYQRVANEQEIYEAQLHDLLQLRQENAYLTTITKQITPYVRSIAKVKERLEPRFQAPVDEQS
ESLQNTHDDSRNNAASARNNPGSVPEKREKTSEPKGNSWAPNGLSEEPLLKNMDHHRSKQKNGGDVPTWR
EHPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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