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Report for CCDS89517.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89517.1 Public Mus musculus 2 Atg13 23 108 98 CCDS HistoryNCBI Gene:51897Re-query CCDS DB by CCDS ID:89517.1Re-query CCDS DB by GeneID:51897See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89517.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028678.8 ENSMUSP00000028678.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028678.8Link to Ensembl Protein Viewer:ENSMUSP00000028678.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000028678Re-query CCDS DB by Protein ID:ENSMUSP00000028678
Original member Current member NCBI NM_001355419.1 NP_001342348.1 Accepted alive Link to Nucleotide Sequence:NM_001355419.1Link to Protein Sequence:NP_001342348.1Re-query CCDS DB by Nucleotide ID:NM_001355419Re-query CCDS DB by Protein ID:NP_001342348Link to BLAST:NP_001342348.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342348.1 516 Q91YI1-1 516 100% 0 0

Chromosomal Locations for CCDS 89517.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 91676386 91676463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91678727 91678855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91679313 91679429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91679920 91679997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91680343 91680457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91681559 91681695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91682026 91682136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91684669 91684759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91685151 91685249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91685782 91685878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91686501 91686541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91688641 91688781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91689791 91689837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91692428 91692547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91693925 91694005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91695918 91695986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1551 nt):
ATGGAAACTGAACTCAGCTCCCAGGACAGGAAGGACTTGGACAAGTTTATTAAGTTTTTTGCCCTCAAGA
CTGTCCAAGTGATTGTCCAGGCTCGACTTGGAGAAAAGATTTGCACCCGCTCATCATCTTCCCCGACGGG
TTCAGATTGGTTCAATTTAGCAATCAAAGACATCCCAGAAGTCACCCATGAAGCAAAGAAGGCCCTGTCA
GGGCAGCTGCCTGCTGTGGGGCGATCTATGTGTGTGGAAATCTCACTCAAGACTTCTGAGGGAGATTCTA
TGGAGTTGGAAATTTGGTGTCTTGAAATGAATGAAAAGTGTGACAAAGAAATCAAAGTTTCCTACACTGT
ATACAACCGATTGTCACTGCTGCTGAAGTCTCTTCTCGCTATTACAAGGGTGACACCAGCCTATCGACTC
TCCAGGAAGCAAGGGCATGAATATGTAATTTTGTACAGGATTTATTTTGGGGAAGTTCAACTGAATGGCT
TAGGAGAAGGCTTCCAGACAGTTCGAGTTGGAACAGTGGGCACCCCTGTGGGCACCCTCACTCTTTCCTG
TGCTTATAGAATTAACTTGGCATTCATGTCCACCAGGCAATTTGAGAGGACCCCACCTATCATGGGGATT
ATCATTGATCACTTTGTTGACCGTCCCTATCCCAGCTCTTCTCCTATGCACCCCTGTAATTACAGAACTG
CTGAGGACGCAGGGGTCGCGTACCCGTCAGTGGAAGACTCTCAGGAAGTGTGTACCACATCTTTTTCCAC
ATCCCCTCCCTCCCAGCTCTCAAGCTCTCGCCTTTCCTATCAGCCTGCTGTCCTGGGCCTTGGATCGGCT
GACCTGGCTTATCCAGTAGTGTTTACTGCTGGCTTAAACACTACACACGCTCACCAGCTGATGGTTCCTG
GGAAGGAAGGCGGGGTAACTCTTGCTCCCAGCCACCCCACTCATGGTGCCCAGGCTGATCCCGAGAGACT
GGTGATGCACATGCCTTCTGATGGGACCCATTGTGCCGCCACGCCCTCAAGCAGTGAGGACACTGAGACT
GTGTCTAACAGCAGTGAAGGACGGGCCTCACCCCATGACATCTTGGAGACTATCTTTGTCCGAAAAGTGG
GAGCATTTGTCAACAAACCCATCAATCAGGTGACTGTGACGAGTTTGGACATACCTTTCGCCATGTTTGC
TCCCAAGAATTTGGAGCTGGAGGATGCTGATCCTATGGTGAATCCCCCGGAGTCCCCAGAGACCACATCT
CCCCTCCATGGCAGCCTGCACTCAGATGGCTCCAGCGGGGGCAGCGGGGGCAGCACACATGACGACTTTG
TTATGATTGACTTTAAACCAGCTTTTTCTAAAGACGACATTCTTCCAATGGACTTGGGGACCTTCTACCG
TGAATTTCAGAACCCCCCTCAGCTGAGCAGCCTCTCCATAGATTTTGGAGCTCAGTCTATGGCGGAAGAT
TTGGACTCCTTACCAGAGAAGCTGGCTGTGCATGAGAAGAATGTCCGAGAATTCGATGCCTTTGTGGAAA
CCCTGCAGTAA

Translation (516 aa):
METELSSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPEVTHEAKKALS
GQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNRLSLLLKSLLAITRVTPAYRL
SRKQGHEYVILYRIYFGEVQLNGLGEGFQTVRVGTVGTPVGTLTLSCAYRINLAFMSTRQFERTPPIMGI
IIDHFVDRPYPSSSPMHPCNYRTAEDAGVAYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAVLGLGSA
DLAYPVVFTAGLNTTHAHQLMVPGKEGGVTLAPSHPTHGAQADPERLVMHMPSDGTHCAATPSSSEDTET
VSNSSEGRASPHDILETIFVRKVGAFVNKPINQVTVTSLDIPFAMFAPKNLELEDADPMVNPPESPETTS
PLHGSLHSDGSSGGSGGSTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLSIDFGAQSMAED
LDSLPEKLAVHEKNVREFDAFVETLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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