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Report for CCDS28670.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28670.1 Public Mus musculus 17 Hspa1l 23 108 98 CCDS HistoryNCBI Gene:15482Re-query CCDS DB by CCDS ID:28670.1Re-query CCDS DB by GeneID:15482See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28670.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000007248.4 ENSMUSP00000007248.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000007248.4Link to Ensembl Protein Viewer:ENSMUSP00000007248.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000007248Re-query CCDS DB by Protein ID:ENSMUSP00000007248
Original member Current member NCBI NM_013558.2 NP_038586.2 Accepted alive Link to Nucleotide Sequence:NM_013558.2Link to Protein Sequence:NP_038586.2Re-query CCDS DB by Nucleotide ID:NM_013558Re-query CCDS DB by Protein ID:NP_038586Link to BLAST:NP_038586.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038586.2 641 P16627 641 100% 0 0

Chromosomal Locations for CCDS 28670.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34976987 34978912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1926 nt):
ATGGCTGCTAATAAAGGAATGGCGATCGGCATCGACTTGGGCACCACCTACTCGTGCGTGGGCGTGTTCC
AGCACGGCAAGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACGACCCCTAGCTACGTGGCCTTCAC
CGACACCGAGCGCCTCATCGGAGACGCTGCCAAGAACCAGGTGGCCATGAATCCCCAGAACACTGTTTTT
GATGCCAAACGTCTAATTGGCAGGAAGTTTAATGATCCTGTTGTGCAGTCAGATATGAAGCTTTGGCCAT
TTCAAGTGATCAATGAAGCCGGCAAACCCAAGGTGATGGTGTCCTATAAAGGAGAGAAGAAAGCCTTCTA
CCCAGAGGAGATCTCATCCATGGTACTGACGAAGATGAAGGAGACTGCAGAGGCTTTTTTGGGCCACAAT
GTCACCAACGCTGTGATCACGGTGCCAGCCTATTTCAATGACTCTCAGCGGCAAGCCACCAAGGATGCAG
GTGTCATCGCAGGACTCAATGTGCTGAGAATAATCAATGAGCCCACGGCGGCCGCCATCGCCTACGGCTT
GGATAAAGGAAGTCACGGAGAGCGGCACGTGCTCATCTTCGACCTGGGGGGTGGCACGTTCGACGTGTCC
ATCCTGACGATCGACGACGGCATCTTCGAGGTGAAGGCCACGGCGGGCGACACGCACCTGGGAGGGGAGG
ACTTCGACAACCGGCTGGTGAGCCACTTCGTGGAGGAGTTCAAGAGGAAGCACAAGAAGGACATCAGCCA
GAACAAGCGCGCGGTGCGGCGGCTGCGCACTGCGTGTGAGAGGGCCAAGAGGACGCTGTCGTCCAGCACC
CAGGCAAACCTGGAGATCGACTCTTTATATGAGGGCATCGACTTCTACACGTCCATCACTAGAGCACGGT
TTGAAGAGCTGTGTGCAGACCTATTTAGAGGCACACTTGAGCCCGTGGAAAAGTCTCTTCGGGATGCCAA
GATGGATAAGGCTAAAATCCATGACATTGTTCTAGTAGGGGGCTCCACCCGCATCCCAAAGGTGCAAAAA
CTGCTTCAGGACTACTTTAATGGACGGGATCTCAACAAGAGTATCAATCCCGATGAGGCAGTCGCCTACG
GAGCTGCAGTCCAGGCAGCTATTTTAATGGGCGACAAATCTGAAAAAGTACAGGATTTGCTTTTGTTGGA
CGTAGCTCCCCTGTCTCTAGGATTGGAGACAGCTGGGGGTGTGATGACTGTACTGATCAAGCGCAACTCC
ACCATCCCCACCAAGCAGACGCAGATCTTCACCACCTACTCGGACAACCAGCCCGGGGTGCTGATCCAGG
TGTACGAGGGCGAGAGAGCCATGACGCGCGACAACAACCTGCTGGGGCGCTTTGACTTGACTGGAATACC
TCCTGCACCTAGGGGCGTGCCACAGATCGAGGTGACCTTCGACATCGACGCCAACGGTATCCTGAACGTC
ACGGCCATGGACAAGAGCACCGGCAAGGCCAACAAGATCACCATCACCAACGACAAGGGTCGCCTGAGCA
AGGAGGAGATTGAGCGCATGGTGCAGGAGGCCGAGCGCTACAAAGCGGAGGATGAGGGCCAGAGGGAGAA
AATCGCTGCCAAAAATGCCTTAGAATCGTACGCCTTTAATATGAAGAGCGCTGTGGGTGATGAGGGTCTG
AAGGACAAGATCAGCGAGTCCGATAAAAAGAAAATACTGGATAAATGCAATGAGGTCCTTTCCTGGCTGG
AGGCCAACCAGCTGGCTGAGAAAGATGAGTTTGATCATAAAAGAAAAGAACTGGAAAATATGTGTAATCC
GATCATCACAAAACTGTACCAGAGCGGATGCACCGGGCCCACCTGTACGCCAGGGTATACTCCCGGCAGG
GCTGCCACAGGCCCTACCATCGAGGAAGTAGATTAG

Translation (641 aa):
MAANKGMAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVF
DAKRLIGRKFNDPVVQSDMKLWPFQVINEAGKPKVMVSYKGEKKAFYPEEISSMVLTKMKETAEAFLGHN
VTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDKGSHGERHVLIFDLGGGTFDVS
ILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSST
QANLEIDSLYEGIDFYTSITRARFEELCADLFRGTLEPVEKSLRDAKMDKAKIHDIVLVGGSTRIPKVQK
LLQDYFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSEKVQDLLLLDVAPLSLGLETAGGVMTVLIKRNS
TIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFDLTGIPPAPRGVPQIEVTFDIDANGILNV
TAMDKSTGKANKITITNDKGRLSKEEIERMVQEAERYKAEDEGQREKIAAKNALESYAFNMKSAVGDEGL
KDKISESDKKKILDKCNEVLSWLEANQLAEKDEFDHKRKELENMCNPIITKLYQSGCTGPTCTPGYTPGR
AATGPTIEEVD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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