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Report for CCDS38580.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38580.1 Public Mus musculus 3 Capza1 23 108 98 CCDS HistoryNCBI Gene:12340Re-query CCDS DB by CCDS ID:38580.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38580.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094028.9 ENSMUSP00000102381.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094028.9Link to Ensembl Protein Viewer:ENSMUSP00000102381.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000094028Re-query CCDS DB by Protein ID:ENSMUSP00000102381
Original member Current member NCBI NM_009797.3 NP_033927.2 Accepted alive Link to Nucleotide Sequence:NM_009797.3Link to Protein Sequence:NP_033927.2Re-query CCDS DB by Nucleotide ID:NM_009797Re-query CCDS DB by Protein ID:NP_033927Link to BLAST:NP_033927.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033927.2 286 P47753 286 99.6504% 0 1

Chromosomal Locations for CCDS 38580.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 104824984 104825124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104825407 104825469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104828527 104828598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104834098 104834176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104834725 104834804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104839782 104839988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104840828 104840891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104842661 104842712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104844918 104844981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104864340 104864378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (861 nt):
ATGGCCGACTTTGAGGATCGGGTGTCGGATGAAGAGAAGGTCCGCATAGCCGCTAAATTCATCACCCATG
CACCCCCAGGGGAGTTTAATGAAGTATTCAATGATGTCCGGCTACTGCTTAACAATGACAATCTCCTCAG
GGAAGGGGCAGCACATGCATTTGCCCAGTATAACATGGATCAGTTCACACCCGTGAAGATAGAAGGCTAC
GATGACCAGGTCTTAATTACAGAGCATGGTGACCTTGGTAACAGCAGATTTTTAGATCCAAGAAACCAAA
TTTCCTTTAAGTTTGATCATTTACGGAAAGAAGCAAGTGACCCGCAGCCAGAGGATGTGGATGGAGGCTT
GAAGTCTTGGAGGGAGTCGTGTGACAGTGCTCTGAGAGCCTATGTGAAAGATCATTATTCCAACGGCTTC
TGTACTGTTTACGCTAAAACTATAGATGGGCAACAGACCATTATTGCATGTATTGAAAGCCACCAGTTTC
AACCAAAAAACTTCTGGAATGGTCGCTGGAGATCAGAGTGGAAGTTCACCATTACACCACCTTCAGCCCA
GGTGGTTGGAGTACTCAAGATTCAGGTTCATTATTATGAAGATGGCAATGTTCAGCTGGTTAGTCATAAA
GATGTGCAGGACTCAGTAACTGTTTCTAATGAAATCCAAACTACCAAGGAGTTTATTAAAATCATAGAGA
GTGCAGAAAATGAGTATCAGACAGCAATTAGTGAAAATTACCAAACTATGTCAGACACCACGTTCAAGGC
CTTGCGCCGGCAGCTTCCAGTTACCCGCACCAAAATCGACTGGAACAAGATACTCAGTTACAAGATTGGC
AAAGAAATGCAGAATGCTTAA

Translation (286 aa):
MADFEDRVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGY
DDQVLITEHGDLGNSRFLDPRNQISFKFDHLRKEASDPQPEDVDGGLKSWRESCDSALRAYVKDHYSNGF
CTVYAKTIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPSAQVVGVLKIQVHYYEDGNVQLVSHK
DVQDSVTVSNEIQTTKEFIKIIESAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIG
KEMQNA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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