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Report for CCDS60080.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
60080.1 Public Homo sapiens 1 A3GALT2 24 110 108 CCDS HistoryNCBI Gene:127550Re-query CCDS DB by CCDS ID:60080.1Re-query CCDS DB by GeneID:127550See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 60080.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000442999.3 ENSP00000475261.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000442999.3Link to Ensembl Protein Viewer:ENSP00000475261.1Re-query CCDS DB by Nucleotide ID:ENST00000442999Re-query CCDS DB by Protein ID:ENSP00000475261
Original member Current member NCBI NM_001080438.1 NP_001073907.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080438.1Link to Protein Sequence:NP_001073907.1Re-query CCDS DB by Nucleotide ID:NM_001080438Re-query CCDS DB by Protein ID:NP_001073907Link to BLAST:NP_001073907.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073907.1 340 U3KPV4 340 100% 0 0

Chromosomal Locations for CCDS 60080.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 33306766 33307453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33312052 33312189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33312501 33312590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33312807 33312890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33321076 33321098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1023 nt):
ATGGCTCTCAAGGAGGGACTCAGGGCCTGGAAGAGAATCTTCTGGCGGCAGATCCTACTTACACTTGGCC
TCTTAGGCCTGTTTCTGTATGGCCTCCCTAAATTCAGGCATCTGGAAGCCCTCATCCCCATGGGCGTCTG
CCCTTCGGCCACAATGTCCCAGCTGAGAGACAACTTCACAGGTGCCCTGCGTCCCTGGGCCCGGCCTGAA
GTTCTGACCTGTACCCCCTGGGGGGCTCCCATTATTTGGGATGGCTCTTTCGACCCAGATGTGGCCAAGC
AAGAGGCTAGACAGCAGAACCTCACCATTGGGCTGACTATCTTTGCTGTAGGCAGATACCTGGAGAAGTA
CCTGGAGCGCTTCCTGGAGACGGCGGAGCAGCACTTCATGGCGGGCCAGAGCGTGATGTACTACGTGTTC
ACCGAGCTTCCGGGAGCGGTGCCCCGCGTGGCGCTGGGCCCGGGACGCCGGCTGCCCGTGGAGCGCGTGG
CGCGCGAGCGGCGCTGGCAAGACGTGTCGATGGCGCGCATGCGCACGTTGCACGCGGCGCTGGGCGGGCT
GCCGGGCCGCGAGGCGCACTTCATGTTCTGCATGGACGTGGACCAGCACTTCAGCGGCACTTTTGGGCCC
GAGGCGCTGGCCGAGTCGGTGGCGCAGCTGCACTCCTGGCACTACCACTGGCCGTCGTGGCTGCTGCCCT
TCGAACGCGACGCGCATTCGGCCGCCGCGATGGCGTGGGGCCAGGGCGACTTCTATAACCACGCGGCGGT
GTTCGGGGGCAGCGTGGCGGCGCTGCGCGGGCTGACGGCGCACTGTGCGGGGGGCCTGGACTGGGACCGC
GCGCGCGGCCTGGAGGCGCGCTGGCACGACGAGAGCCACCTCAACAAGTTCTTCTGGCTGCACAAGCCCG
CCAAGGTGCTGTCGCCCGAGTTCTGCTGGAGCCCGGACATCGGCCCGCGGGCCGAGATCCGCCGCCCGCG
ACTGCTGTGGGCGCCCAAGGGGTACCGGCTGCTGCGGAACTAG

Translation (340 aa):
MALKEGLRAWKRIFWRQILLTLGLLGLFLYGLPKFRHLEALIPMGVCPSATMSQLRDNFTGALRPWARPE
VLTCTPWGAPIIWDGSFDPDVAKQEARQQNLTIGLTIFAVGRYLEKYLERFLETAEQHFMAGQSVMYYVF
TELPGAVPRVALGPGRRLPVERVARERRWQDVSMARMRTLHAALGGLPGREAHFMFCMDVDQHFSGTFGP
EALAESVAQLHSWHYHWPSWLLPFERDAHSAAAMAWGQGDFYNHAAVFGGSVAALRGLTAHCAGGLDWDR
ARGLEARWHDESHLNKFFWLHKPAKVLSPEFCWSPDIGPRAEIRRPRLLWAPKGYRLLRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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