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Report for CCDS45825.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45825.1 Public Homo sapiens 18 TMEM200C 24 110 108 CCDS HistoryNCBI Gene:645369Re-query CCDS DB by CCDS ID:45825.1Re-query CCDS DB by GeneID:645369See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45825.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000383490.3 ENSP00000372982.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000383490.3Link to Ensembl Protein Viewer:ENSP00000372982.2Re-query CCDS DB by Nucleotide ID:ENST00000383490Re-query CCDS DB by Protein ID:ENSP00000372982
Original member Current member EBI ENST00000581347.2 ENSP00000463375.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000581347.2Link to Ensembl Protein Viewer:ENSP00000463375.1Re-query CCDS DB by Nucleotide ID:ENST00000581347Re-query CCDS DB by Protein ID:ENSP00000463375
Original member Current member NCBI NM_001080209.3 NP_001073678.1 Accepted alive Link to Nucleotide Sequence:NM_001080209.3Link to Protein Sequence:NP_001073678.1Re-query CCDS DB by Nucleotide ID:NM_001080209Re-query CCDS DB by Protein ID:NP_001073678Link to BLAST:NP_001073678.1
Original member Current member NCBI NM_001395400.1 NP_001382329.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001395400.1Link to Protein Sequence:NP_001382329.1Re-query CCDS DB by Nucleotide ID:NM_001395400Re-query CCDS DB by Protein ID:NP_001382329Link to BLAST:NP_001382329.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073678.1 621 A6NKL6 621 100% 0 0
NP_001382329.1 621 A6NKL6 621 100% 0 0

Chromosomal Locations for CCDS 45825.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 5890198 5892063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1866 nt):
ATGATCGCCACCGGCGGCCTGCTAAGGATTTCCGCCAGAAAGCAGGATCCACTCCGCCCCCCAAGCCAGA
TACCCAAGCGCAAGCGGAAAGCCAAGAAGAGGCGCAAGAACGACGTGGTGGTGGTGAAAGGCAAGCTGAA
GCTGTGCTCCATCTCAGGGCTCATCGCCCTCTGTGGGATCCTGGTGCTGCTGGTGGGCATAGCCATGGCG
GTGGTGGGCTACTGGCCCAAGGCCACCGGGACCAATCGGGAGGGGGGTAAGCAGCTGCCGCCTGCGGGCA
GCAGCCACCGGGTCCCAACCACGGCCAACAGCAGTAGCAGTGGCAGCAAAAACCGGTCCAGGAGCCACCC
TAGGGCTCCAGGGGGTGTCAACTCCAGTTCCGCGGGCGCGCCCAGGAGCACGCCTCCAGCACGAGCCGCC
TCCCCGTCCTCCTCCTCCACGTCCGTGGGCTTCTTCTTCCGCATCTTCTCTGGCTACCTGCACTCTGACA
AGCTCAAGGTCTTCGGGCCCCTCATCATGGGCATCGGCATCTTCCTCTTCATCTGCGCAAACGCGGTCCT
CCACGAGAACCGGGACAAGAAGACCAAAATCATCAACCTGCGGGACCTCTACTCCACCGTCATCGACGTG
CACAGCCTCCGCGCCAAAGACCTGGCGGCCGCCGCGGCCGCCGCCGCGGCCGCCGCCGCCTCTTCGTCGT
CGTCTGCCCCCGCCGCGGCGCCCCCCGGGGCCATACCGCTCAACGGCTTCCTCAGCTACGTGCAGTCGCG
GGGCCTGGAGCTGAAGCCCGGGGGCTGCGGTGGCTCCGGGGACGCCTTCGGAGCGGCGGCGATGCTGGCC
AAGGGCTCGTGGCCTCCTCACCCCGCGGCGCCGAGCGGCGGCCGCCCTCGGGGCGCCGCGTCCCCGCCGG
ACCTGGCCTCTTCCCCGCGCTGTCCGCGGGAGCCCCCGAGCCTGGCCGAGGCCGTGTACAGCGTCTACCG
CGAGCGCTCGGGCGTGGCAGGCAGTCGCCGGGCCGCCGCTGCCACCGCCGCCGCAGCCGCTAGCAGCTGC
AGCAGTCCGGCGCCCTGCAGCCCACCCGAGAGCTGGGGGCGCCAGAGCACGGCCAGCTCCTTCGTGGACT
CCTCGCTGAGCGCCTTCGCGCTGCTGCCCTTGCAAGGGGGCCGCGATAGGGGCGGGGACGCGGAGGGCGC
GAGCTGCAGCTGGCAGAGGCCTCCGGGGGAACGCGGCTCCCAGGAGATCCCGAGGGGCGAGCTCGACCTG
AGCATGACCAACCTCCGCGGCGCAGAGGGCAGCATGCGCGGGGCGCGCCGGGAGCCGGAGGAGCCCGAGG
GCGCGGTAGCGGCGCGCGCCGCCAGGGGGCAGGGCGGCCGCCTGCCCAGGACCGGCAGGTACGCGGCCTT
GCGGCGCCGCAGCACCAGCGGGCTCCCGGACTACCGGGCGCCGCCGTCCCCCGAGCCCCCGCCCTCCCCG
GGGAGTGCGGACCCGGACTCCAGCCCTCTGGCCAAGGCCGCCTCCCCCTCGCCACCCCTGCGGCTGGAGG
GCTCGCCCCCCACCAGGCGGGACTCCGGGAGCTCCCAGTCGGATGACCCATCCAGCAGCAATAAGGGCTA
CACACCCCTGCGGGAGGCCGGCACCTCCACCGAGTCGGTCTTGGACGCAGTAGCTGGTCAAACGCGAGAC
TCTGCTGTGGCCGCCCCCGTTCTGGGTGCGGAGCAGAGCTCGCCGGAGGGTGCCAGCCAGGAGCCACCCA
CGGCCGAGCAACCTCAGCCGGTGCAGAGGCAGTTTACAAACAAGGAGAAACTCATCATGATTTCCAGGTC
TCATGCCATAGGGGTAGAAGAAGAACTGGAAAGCACAGGCATTTAG

Translation (621 aa):
MIATGGLLRISARKQDPLRPPSQIPKRKRKAKKRRKNDVVVVKGKLKLCSISGLIALCGILVLLVGIAMA
VVGYWPKATGTNREGGKQLPPAGSSHRVPTTANSSSSGSKNRSRSHPRAPGGVNSSSAGAPRSTPPARAA
SPSSSSTSVGFFFRIFSGYLHSDKLKVFGPLIMGIGIFLFICANAVLHENRDKKTKIINLRDLYSTVIDV
HSLRAKDLAAAAAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGCGGSGDAFGAAAMLA
KGSWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAAAATAAAAASSC
SSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQGGRDRGGDAEGASCSWQRPPGERGSQEIPRGELDL
SMTNLRGAEGSMRGARREPEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPPPSP
GSADPDSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLREAGTSTESVLDAVAGQTRD
SAVAAPVLGAEQSSPEGASQEPPTAEQPQPVQRQFTNKEKLIMISRSHAIGVEEELESTGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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