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Report for CCDS9339.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9339.1 Public Homo sapiens 13 TEX26 24 110 108 CCDS HistoryNCBI Gene:122046Re-query CCDS DB by CCDS ID:9339.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9339.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380473.8 ENSP00000369840.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380473.8Link to Ensembl Protein Viewer:ENSP00000369840.3Re-query CCDS DB by Nucleotide ID:ENST00000380473Re-query CCDS DB by Protein ID:ENSP00000369840
Original member Current member NCBI NM_152325.3 NP_689538.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152325.3Link to Protein Sequence:NP_689538.1Re-query CCDS DB by Nucleotide ID:NM_152325Re-query CCDS DB by Protein ID:NP_689538Link to BLAST:NP_689538.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689538.1 289 Q8N6G2 289 100% 0 0

Chromosomal Locations for CCDS 9339.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 30932716 30932776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30939694 30939778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30952660 30952825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30956873 30957029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30966222 30966398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30968885 30969046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30974846 30974907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGGAACAGCCTGGGCCCAGGGCTCCGGATCCCTCTCTCTGCCACCACAACCTCCAGCCAACAGATGACC
CCAACTGGGATTCCTATGCTACCACTATGAGGACTGCATTCACGCCTAAAACAGGAGCAGTGCCTGCCTT
AATTCGCCAAAACGGTATCAGAAGATTAGGATATACATATTCACTTAGTGATCCTATTCTCAATCAGACA
CAATATAGTGATGAGTACACTTGGAAATCACACTCTAAAGAAGATTTGATCAAAACTGAGACTTCAAGAG
GAATCAAGAGCCACAAATCTCATCTCAATGAAGACATTTTCCTGTGGACACTACCTCACTGTCAACAAAC
GGGGACACTAAAGAACTGCCTCCCTTGGAAAATCCCGGCTTCAATGAAAGAAGTTAACAAGGCACTATCA
AATCAGTTTATTTCCCTTACTAAGAGAGACTTTGTGGACAGATCAAAAGCTCAGAAGATTAAGAAAAGTT
CTCACTTGTCTCTGGAATGGAAAAAGTTACTTCCCCAACCTCCAGACACTGAATTCCGAAGGAATTACCA
AATTCCAGCTAAAATTCCTGAGCTTCAAGATTTCAGTTTCAAATATGGATGCTACTCAAGCTTGCCTGTT
GCTTCTCAGGGTCTAGTGCCTTCTGTGCTGCACAGCTACCTGAGGAACCAAGAGCACACAAAGAAACAGA
CCACATACCAAAGTGACTACGACAAAACCTACCCAGATTTCTTAATGCTTTTAAACTCATTTACTTCCTC
TCAAGTCAAAGAGTACCTTCAGAGTCTTTCCTACAAAGATAGACAAATTATTGATCGCTTTATTCGTACT
CACTGTGACACTAACAAAAAGAAGAAATGA

Translation (289 aa):
MEQPGPRAPDPSLCHHNLQPTDDPNWDSYATTMRTAFTPKTGAVPALIRQNGIRRLGYTYSLSDPILNQT
QYSDEYTWKSHSKEDLIKTETSRGIKSHKSHLNEDIFLWTLPHCQQTGTLKNCLPWKIPASMKEVNKALS
NQFISLTKRDFVDRSKAQKIKKSSHLSLEWKKLLPQPPDTEFRRNYQIPAKIPELQDFSFKYGCYSSLPV
ASQGLVPSVLHSYLRNQEHTKKQTTYQSDYDKTYPDFLMLLNSFTSSQVKEYLQSLSYKDRQIIDRFIRT
HCDTNKKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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