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Report for CCDS24325.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24325.1 Public Mus musculus 10 Or6c66 23 108 98 CCDS HistoryNCBI Gene:258549Re-query CCDS DB by CCDS ID:24325.1Re-query CCDS DB by GeneID:258549See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24325.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079810.2 ENSMUSP00000078739.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079810.2Link to Ensembl Protein Viewer:ENSMUSP00000078739.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000079810Re-query CCDS DB by Protein ID:ENSMUSP00000078739
Original member Current member EBI ENSMUST00000204979.2 ENSMUSP00000144716.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204979.2Link to Ensembl Protein Viewer:ENSMUSP00000144716.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204979Re-query CCDS DB by Protein ID:ENSMUSP00000144716
Original member Current member NCBI NM_146556.2 NP_666767.2 Accepted alive Link to Nucleotide Sequence:NM_146556.2Link to Protein Sequence:NP_666767.2Re-query CCDS DB by Nucleotide ID:NM_146556Re-query CCDS DB by Protein ID:NP_666767Link to BLAST:NP_666767.2

Chromosomal Locations for CCDS 24325.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 129625124 129626059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGAAAAATCGAACATCTGTGAGTGAGTTTATTCTTTTGGGATTGACAAGTGATCCAAAGCTAAACATTT
TGATTTTTATATTTTTATTTATCACTTATATTTTGAGCATTACTGGAAATCTGACCATTATTACCCTCAC
TCTGATAGATTCACACCTCAAGACACCCATGTACTTTTTTCTTCGAAATTTCTCATTCCTAGAAATCTCA
TTTACCACAGTTTCCATTCCTCGCTTCCTTGTGAGCATTGTGACAGGAGATATGACCATCTCCTATAACT
CCTGCATGGCTCAGGTGTTCTTCTTCATACTCTTGGGTTCAACTGAATTTTTCCTTCTGACTGCTATGTC
CTATGACCGCTATGTAGCTATCTGTAAGCCCTTGCATTACACCACAATAATGAACAGTAGAGTCTGCATG
CAGCTCATTGTGAGCTCTTGGCTGGCTGGATTTCTCATCATCTTTCCACCTGTGATCATGGGCCTTCAAC
TGGATTTCTGTGACTCCAACATTATTGACCATTTCACCTGTGATTCCTCCCCCATGCTGCTCATCTCTTG
CACAGACACAGCCTTCCTGGAGCTCTTGGCATTCTTCCTGGCAGTATTTACTCTCATGGTAACCTTAACA
TTAGTAATTCTGTCCTATTCCTTCATCCTTAGGACAATTCTAAGAATTCCCTCTGCTGAGCAAAGGAAAA
AGGCCTTTTCTACATGTTCATCACACATGATTGTTGTGTCCATTTCCTATGGAAGCTGTATATTCATGTA
TGTAAAAACTTCAGCAAAGGAAGGAGTGGCTTTGACTAAGGGTATAGCAGTGCTCAACACCTCTGTTGCC
CCAATGCTGAATCCTTTTATTTACTCCCTTAGAAACAAACAAGTAAAAGAATCCTTCAGGAATTTGATCA
AAAAATGTATTTCAAATAAAATTTAA

Translation (311 aa):
MKNRTSVSEFILLGLTSDPKLNILIFIFLFITYILSITGNLTIITLTLIDSHLKTPMYFFLRNFSFLEIS
FTTVSIPRFLVSIVTGDMTISYNSCMAQVFFFILLGSTEFFLLTAMSYDRYVAICKPLHYTTIMNSRVCM
QLIVSSWLAGFLIIFPPVIMGLQLDFCDSNIIDHFTCDSSPMLLISCTDTAFLELLAFFLAVFTLMVTLT
LVILSYSFILRTILRIPSAEQRKKAFSTCSSHMIVVSISYGSCIFMYVKTSAKEGVALTKGIAVLNTSVA
PMLNPFIYSLRNKQVKESFRNLIKKCISNKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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