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Report for CCDS8665.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8665.1 Public Homo sapiens 12 H4C16 24 110 108 CCDS HistoryNCBI Gene:121504Re-query CCDS DB by CCDS ID:8665.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8665.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358064.3 ENSP00000350767.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000358064.3Link to Ensembl Protein Viewer:ENSP00000350767.3Re-query CCDS DB by Nucleotide ID:ENST00000358064Re-query CCDS DB by Protein ID:ENSP00000350767
Original member Current member EBI ENST00000539745.2 ENSP00000443017.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000539745.2Link to Ensembl Protein Viewer:ENSP00000443017.1Re-query CCDS DB by Nucleotide ID:ENST00000539745Re-query CCDS DB by Protein ID:ENSP00000443017
Original member Current member NCBI NM_175054.2 NP_778224.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_175054.2Link to Protein Sequence:NP_778224.1Re-query CCDS DB by Nucleotide ID:NM_175054Re-query CCDS DB by Protein ID:NP_778224Link to BLAST:NP_778224.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_778224.1 103 P62805 103 100% 0 0

Chromosomal Locations for CCDS 8665.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 14770773 14771084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (312 nt):
ATGTCTGGGCGAGGTAAAGGTGGCAAGGGGCTGGGTAAGGGAGGCGCCAAGCGCCACCGGAAGGTGCTGC
GGGACAATATCCAAGGCATTACAAAGCCGGCGATTCGCCGTCTCGCCCGACGTGGGGGCGTCAAGCGCAT
TTCTGGTCTCATCTACGAGGAGACCCGGGGAGTCCTCAAAGTCTTCCTGGAGAACGTGATCCGTGACGCG
GTGACTTACACGGAGCACGCCAAGCGCAAGACCGTCACGGCCATGGATGTGGTGTACGCGCTGAAACGCC
AGGGTCGCACCCTTTATGGTTTCGGCGGTTGA

Translation (103 aa):
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDA
VTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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