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Report for CCDS15083.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15083.1 Public Mus musculus 1 Sgpp2 23 108 98 CCDS HistoryNCBI Gene:433323Re-query CCDS DB by CCDS ID:15083.1Re-query CCDS DB by GeneID:433323See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15083.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036172.9 ENSMUSP00000036656.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036172.9Link to Ensembl Protein Viewer:ENSMUSP00000036656.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000036172Re-query CCDS DB by Protein ID:ENSMUSP00000036656
Original member Current member NCBI NM_001004173.2 NP_001004173.1 Accepted alive Link to Nucleotide Sequence:NM_001004173.2Link to Protein Sequence:NP_001004173.1Re-query CCDS DB by Nucleotide ID:NM_001004173Re-query CCDS DB by Protein ID:NP_001004173Link to BLAST:NP_001004173.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004173.1 354 Q810K3 354 100% 0 0

Chromosomal Locations for CCDS 15083.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 78310419 78310502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78360071 78360229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78390475 78390654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78393359 78393448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78416875 78417426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGGCCGAACTGCTGCGGAGCCTGCGGGATTCACAGCTCGTGGCGCGCTTCCAGCGCCGCTGCGGGCTCT
TCCCAGCGCGGGAGGCTTCTGGAGAGGAGCATGTGGTGAAGAATTATTTCTACTATTACCTGTTCCGGTT
TTCAGCCGCTTTGGGCCAGGAAGTGTTCTACATCACGTTTCTCCCTTTCACCCACTGGAATATCGACCCT
AATTTGTCCAGAAGATTGGTTGTGATATGGGTTTTGGTGATGTATATTGGCCAGGTGGCCAAGGACATCC
TGAAGTGGCCCCGGCCCTCCTTTCCTCCCGTTGTGAGACTTGAAAAGAGAATTATTGCAGAGTACGGAAT
GCCATCCACCCACGCCATGGCGGCCACCGCCATCTCCTTCACCCTCCTCATCTCTACCATGGACCGGTAT
CAGTACCCTTTCATTTTAGGCCTGATGATGGCTGTGGTGTTCTCTACGCTGGTGTGTCTCAGCAGACTCT
ACACGGGGATGCACACGGTCCTGGATATCCTGGGTGGCGTTCTGATCACTGCAGTCCTCATTGCTCTGAC
CTACCCTGCCTGGACCCTCATCGATTCCCTGGACTCTGCCAGCCCCCTCTTCCCTGTGTGTGTCATAGTT
GTACCGTTCCTCTTGTGCTACAATTACCCTGTGTCTGACTACTACAGCCCGACCAGGGCAGACACCACCA
CCATCGTGGCTGCTGGGGCTGGAGTGACCCTGGGATTCTGGATCAACCATTTCTTCCAGCTCGTGTCCAA
GCCCACCCCATCTCTTCCTGTCATTCAGAACATCCCACCCCTTACCACTGACATGCTGGTTTTAGGTCTG
ACCAAATTTATGGTGGGAATCATGTTGATCCTCTTGGTTCGCCAACTGGTGCAAAAGCTCTCCCTGCAAG
TATTATTCTCATGGTTCAAGGTGGTTACTAGGAACAAGGAGGCCAGGCGAAGACTAGAGATTGAAGTCCC
TTACAAGTTTGTTACCTACACATCTGTTGGCATCTGTGCCACAACCTTTGTGCCAATGTTGCACAGGTTT
TTGGGATTGCTCTGA

Translation (354 aa):
MAELLRSLRDSQLVARFQRRCGLFPAREASGEEHVVKNYFYYYLFRFSAALGQEVFYITFLPFTHWNIDP
NLSRRLVVIWVLVMYIGQVAKDILKWPRPSFPPVVRLEKRIIAEYGMPSTHAMAATAISFTLLISTMDRY
QYPFILGLMMAVVFSTLVCLSRLYTGMHTVLDILGGVLITAVLIALTYPAWTLIDSLDSASPLFPVCVIV
VPFLLCYNYPVSDYYSPTRADTTTIVAAGAGVTLGFWINHFFQLVSKPTPSLPVIQNIPPLTTDMLVLGL
TKFMVGIMLILLVRQLVQKLSLQVLFSWFKVVTRNKEARRRLEIEVPYKFVTYTSVGICATTFVPMLHRF
LGLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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