NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS31361.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31361.2 Public Homo sapiens 11 OR51F2 24 110 108 CCDS HistoryNCBI Gene:119694Re-query CCDS DB by CCDS ID:31361.2See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 31361.1
The coding region has been updated to start at an alternate in-frame start codon that is supported by conservation data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 31361.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322110.8 ENSP00000323952.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000322110.8Link to Ensembl Protein Viewer:ENSP00000323952.5Re-query CCDS DB by Nucleotide ID:ENST00000322110Re-query CCDS DB by Protein ID:ENSP00000323952
Original member Current member NCBI NM_001004753.2 NP_001004753.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001004753.2Link to Protein Sequence:NP_001004753.2Re-query CCDS DB by Nucleotide ID:NM_001004753Re-query CCDS DB by Protein ID:NP_001004753Link to BLAST:NP_001004753.2

Chromosomal Locations for CCDS 31361.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 4821422 4822414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGTCGGTCCTCAATAATACCATTGCTGAGCCTCTGATCTTCCTCCTGATGGGCATTCCAGGCCTGAAAG
CCACCCAGTACTGGATCTCCATCCCTTTTTGTCTCCTATATGTTGTTGCCGTCTCTGGAAATAGCATGAT
CCTGTTTGTGGTCCTCTGTGAACGGAGCCTCCATAAGCCTATGTACTATTTCCTCTCTATGCTTTCAGCC
ACAGACCTGAGCTTGTCCCTGTGTACACTTTCTACTACCCTTGGTGTCTTCTGGTTTGAAGCCCGAGAAA
TCAACCTAAATGCCTGCATTGCCCAGATGTTCTTTCTACACGGATTTACTTTCATGGAGTCTGGGGTTCT
ACTGGCCATGGCCTTTGATCGTTTTGTGGCCATCTGTTACCCACTGAGATACACTACCATCCTTACCAAT
GCCCGAATTGCCAAGATTGGGATGAGCATGTTGATAAGAAATGTTGCCGTCATGTTGCCAGTCATGCTCT
TTGTCAAGAGGTTGTCCTTCTGCAGTTCTATGGTCCTTTCACATTCTTACTGCTACCATGTTGATCTCAT
CCAACTCTCCTGCACAGACAATAGGATCAACAGCATCCTTGGTCTGTTTGCGCTTTTGTCCACTACAGGG
TTTGACTGCCCTTGCATCCTGCTCTCCTATATCCTGATCATTCGATCTGTCCTCAGCATTGCTTCCTCAG
AAGAGAGGCGGAAAGCCTTCAACACCTGCACATCCCACATCAGTGCTGTTTCCATCTTCTACCTCCCTCT
CATCAGTTTGTCTCTTGTCCATCGCTATGGCCATTCAGCACCTCCATTTGTCCACATCATCATGGCCAAT
GTCTTTCTGCTAATCCCTCCTGTGCTCAACCCTATTATTTACAGTGTAAAGATTAAGCAGATTCAAAAGG
CCATTATCAAGGTCTTAATTCAGAAGCACTCCAAATCTAATCATCAGCTATTTCTGATTAGAGATAAAGC
CATTTATGAATAA

Translation (330 aa):
MSVLNNTIAEPLIFLLMGIPGLKATQYWISIPFCLLYVVAVSGNSMILFVVLCERSLHKPMYYFLSMLSA
TDLSLSLCTLSTTLGVFWFEAREINLNACIAQMFFLHGFTFMESGVLLAMAFDRFVAICYPLRYTTILTN
ARIAKIGMSMLIRNVAVMLPVMLFVKRLSFCSSMVLSHSYCYHVDLIQLSCTDNRINSILGLFALLSTTG
FDCPCILLSYILIIRSVLSIASSEERRKAFNTCTSHISAVSIFYLPLISLSLVHRYGHSAPPFVHIIMAN
VFLLIPPVLNPIIYSVKIKQIQKAIIKVLIQKHSKSNHQLFLIRDKAIYE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH