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Report for CCDS21049.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21049.1 Public Mus musculus 7 Pak4 23 108 98 CCDS HistoryNCBI Gene:70584Re-query CCDS DB by CCDS ID:21049.1Re-query CCDS DB by GeneID:70584See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21049.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032823.4 ENSMUSP00000032823.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032823.4Link to Ensembl Protein Viewer:ENSMUSP00000032823.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000032823Re-query CCDS DB by Protein ID:ENSMUSP00000032823
Original member Current member EBI ENSMUST00000108283.7 ENSMUSP00000103918.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108283.7Link to Ensembl Protein Viewer:ENSMUSP00000103918.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108283Re-query CCDS DB by Protein ID:ENSMUSP00000103918
Original member Current member NCBI NM_027470.3 NP_081746.1 Accepted alive Link to Nucleotide Sequence:NM_027470.3Link to Protein Sequence:NP_081746.1Re-query CCDS DB by Nucleotide ID:NM_027470Re-query CCDS DB by Protein ID:NP_081746Link to BLAST:NP_081746.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081746.1 593 Q8BTW9 593 100% 0 0

Chromosomal Locations for CCDS 21049.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 28559650 28559805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28560145 28560279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28560799 28560924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28562538 28562664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28562948 28563081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28564206 28564646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28564813 28565271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28568034 28568237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1782 nt):
ATGTTTGGAAAGAAGAAGAAGCGGGTGGAGATCTCAGCCCCATCCAACTTCGAGCACCGTGTACACACAG
GCTTTGATCAGCATGAGCAGAAGTTCACAGGGCTGCCCCGCCAGTGGCAGAGCCTGATTGAGGAATCAGC
ACGCAGACCCAAGCCCCTGATCGACCCTGCCTGCATCACGTCCATCCAGCCTGGAGCCCCCAAGACCATC
GTTCGGGGCAGCAAAGGTGCCAAGGATGGGGCTCTCACTCTGCTGCTTGACGAATTTGAGAACATGTCGG
TGACGCGCTCCAACTCCCTACGCAGAGAGAGTCCACCACCACCTGCCCGTGCCCACCAGGAGAATGGAAT
GCTGGAGGAGCGGGCAGCCCCGGCCAGAATGGCCCCTGACAAAGCTGGAAGCAGAGCCCGGGCCACAGGC
CACAGTGAGGCAGGCAGTGGCAGTGGTGACAGACGGCGGGTGGGGCCAGAGAAAAGGCCCAAATCTTCGA
GGGATGGTCCAGGAGGACCCCAGGAGGCCTCCCGCGATAAGCGCCCACTCTCTGGGCCTGATGTCAGCAC
TCCTCAGCCTGGCAGTCTGACCAGCGGGACAAAACTAGCAGCTGGCAGGCCCTTTAACACATACCCACGG
GCTGACACGGACCACCCACCCCGCGGTGCCCAGGGGGAGCCACATACCATGGCCCCTAATGGGCCTTCAG
CCACAGGCCTGGCCGCTCCTCAGTCTTCCTCCTCCTCCCGGCCTCCCACCCGAGCCCGTGGTGCTCCCAG
CCCAGGAGTTCTGGGTCCCCATGCCTCTGAGCCCCAGTTGGCCCCCCCAGCACGTGCCCTTGCTGCCCCT
GCTGTACCTCCTGCCCCTGGGCCCCCTGGGCCTCGCTCACCACAGCGGGAGCCCCAACGAGTGTCCCATG
AGCAGTTCCGGGCTGCCCTGCAGCTGGTGGTGGACCCAGGGGACCCTCGTTCCTATCTAGACAACTTCAT
CAAGATTGGTGAGGGCTCTACAGGTATTGTGTGCATTGCCACTGTACGCAGCTCAGGCAAACTGGTGGCC
GTCAAGAAGATGGACTTGCGCAAGCAGCAAAGACGTGAACTGCTCTTCAATGAGGTGGTGATCATGCGGG
ACTACCGGCACGAGAACGTGGTGGAGATGTACAACAGCTACCTGGTGGGTGACGAACTCTGGGTCGTCAT
GGAGTTCCTGGAAGGCGGCGCCCTCACGGATATTGTCACCCACACCAGGATGAACGAGGAACAGATCGCC
GCCGTGTGCCTGGCTGTGCTTCAGGCGCTGGCTGTGCTCCACGCCCAGGGTGTCATCCACCGTGACATCA
AGAGTGACTCTATCTTGCTGACCCATGATGGCCGGGTGAAGCTGTCCGACTTCGGGTTTTGTGCCCAGGT
GAGCAAGGAGGTGCCTCGGAGGAAGTCGCTGGTGGGCACCCCGTATTGGATGGCCCCGGAGCTCATCTCC
CGCCTTCCCTATGGGCCAGAGGTGGATATCTGGTCACTGGGGGTGATGGTGATCGAGATGGTGGATGGGG
AGCCCCCTTACTTCAACGAGCCACCCCTCAAAGCTATGAAGATGATCCGGGACAACCTCCCGCCCCGACT
GAAGAACCTGCACAAGGCGTCACCGTCTCTGAAAGGCTTCTTGGATCGCCTGCTAGTGCGGGACCCGGCC
CAGCGGGCCACTGCTGCCGAGCTGCTGAAGCACCCGTTCCTCACCAAGGCGGGGCCACCAGCCAGCATCG
TGCCCCTGATGCGCCAGCACCGAACCAGATGA

Translation (593 aa):
MFGKKKKRVEISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLIEESARRPKPLIDPACITSIQPGAPKTI
VRGSKGAKDGALTLLLDEFENMSVTRSNSLRRESPPPPARAHQENGMLEERAAPARMAPDKAGSRARATG
HSEAGSGSGDRRRVGPEKRPKSSRDGPGGPQEASRDKRPLSGPDVSTPQPGSLTSGTKLAAGRPFNTYPR
ADTDHPPRGAQGEPHTMAPNGPSATGLAAPQSSSSSRPPTRARGAPSPGVLGPHASEPQLAPPARALAAP
AVPPAPGPPGPRSPQREPQRVSHEQFRAALQLVVDPGDPRSYLDNFIKIGEGSTGIVCIATVRSSGKLVA
VKKMDLRKQQRRELLFNEVVIMRDYRHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIA
AVCLAVLQALAVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELIS
RLPYGPEVDIWSLGVMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKASPSLKGFLDRLLVRDPA
QRATAAELLKHPFLTKAGPPASIVPLMRQHRTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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