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Report for CCDS8187.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8187.1 Public Homo sapiens 11 IGHMBP2 24 110 108 CCDS HistoryNCBI Gene:3508Re-query CCDS DB by CCDS ID:8187.1Re-query CCDS DB by GeneID:3508See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8187.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000255078.8 ENSP00000255078.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000255078.8Link to Ensembl Protein Viewer:ENSP00000255078.4Re-query CCDS DB by Nucleotide ID:ENST00000255078Re-query CCDS DB by Protein ID:ENSP00000255078
Original member Current member NCBI NM_002180.3 NP_002171.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002180.3Link to Protein Sequence:NP_002171.2Re-query CCDS DB by Nucleotide ID:NM_002180Re-query CCDS DB by Protein ID:NP_002171Link to BLAST:NP_002171.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002171.2 993 P38935 993 100% 0 0

Chromosomal Locations for CCDS 8187.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 68903953 68904038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68906069 68906238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68908145 68908337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68908534 68908631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68911440 68911603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68914823 68915023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68917736 68917883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68929183 68929357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68933299 68933481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68933795 68933913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68934464 68934558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68935299 68935422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68936237 68937091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68938182 68938354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68939534 68939731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2982 nt):
ATGGCCTCGGCAGCTGTGGAGAGCTTCGTGACCAAGCAACTGGACCTGCTGGAGCTTGAGAGAGACGCGG
AGGTGGAGGAGCGCAGGTCCTGGCAGGAGAACATCTCTCTGAAAGAGCTCCAGAGCCGAGGCGTGTGTTT
GCTGAAGCTGCAGGTATCCAGCCAGCGCACTGGGCTGTACGGACGGCTGCTGGTCACCTTTGAGCCCAGG
CGATACGGGTCCGCGGCAGCTCTTCCCAGTAACAGCTTTACTTCTGGTGATATCGTGGGCCTGTACGATG
CTGCTAATGAGGGCAGTCAGCTGGCCACTGGGATCTTGACCCGGGTCACCCAGAAGTCGGTCACGGTGGC
CTTTGATGAGTCCCACGATTTCCAGTTGAGCTTGGACCGAGAGAATTCCTACAGACTGTTAAAACTTGCC
AATGATGTCACTTACAGGCGACTGAAAAAAGCCCTGATTGCTCTAAAGAAGTATCATTCTGGCCCAGCCT
CCTCACTCATAGAAGTGCTCTTTGGCAGATCTGCTCCCAGTCCTGCCAGTGAAATACACCCGCTGACATT
CTTCAACACCTGCCTGGACACCTCCCAGAAAGAAGCGGTTTTATTTGCGCTGTCTCAGAAAGAACTTGCC
ATCATCCATGGACCTCCTGGCACTGGGAAAACCACGACTGTGGTTGAGATCATTCTTCAAGCTGTGAAAC
AAGGCTTAAAGGTTCTGTGCTGCGCCCCCTCCAACATCGCCGTGGACAATCTGGTGGAGCGCCTGGCTCT
GTGTAAGCAGCGGATTCTGCGCCTGGGACACCCTGCCCGCCTCCTGGAGTCCATTCAGCAGCACTCCCTG
GATGCGGTTTTAGCGCGGAGCGACAGTGCCCAGATTGTTGCAGATATCAGGAAGGACATCGACCAGGTCT
TTGTGAAAAACAAAAAGACCCAGGATAAGAGAGAGAAAAGTAATTTTCGAAATGAAATTAAGCTGTTAAG
AAAAGAACTGAAGGAGAGGGAAGAAGCAGCTATGCTCGAGAGCCTCACTTCGGCAAACGTGGTCCTTGCA
ACAAACACAGGTGCGTCTGCCGATGGCCCCCTGAAGTTGCTGCCCGAGAGCTACTTCGACGTGGTGGTCA
TTGACGAGTGTGCCCAGGCCCTCGAGGCGAGCTGCTGGATCCCCCTGCTGAAGGCCAGAAAGTGCATCCT
GGCGGGCGATCACAAGCAGCTGCCCCCCACCACAGTCTCTCACAAGGCTGCGCTGGCAGGACTGTCACTC
AGCCTGATGGAACGCCTGGCTGAGGAGTACGGCGCGAGGGTGGTGCGGACACTGACGGTGCAGTACCGCA
TGCACCAGGCTATCATGCGCTGGGCCTCAGACACCATGTACCTTGGGCAGCTCACAGCCCACTCTTCCGT
GGCAAGGCACCTCCTGAGGGACCTCCCAGGTGTGGCTGCCACAGAAGAGACGGGTGTGCCCCTGCTCTTG
GTGGACACCGCCGGCTGCGGGCTGTTTGAGCTGGAGGAGGAGGACGAACAGTCGAAAGGGAACCCTGGCG
AAGTCCGCCTCGTCAGTTTGCACATCCAGGCTCTGGTGGACGCTGGTGTTCCAGCCCGTGACATTGCTGT
GGTCTCGCCATACAACCTCCAGGTGGACCTGCTCAGACAGAGCCTTGTGCACAGGCACCCTGAGCTTGAA
ATCAAGTCTGTCGATGGCTTCCAAGGCCGAGAGAAGGAGGCCGTGATACTGTCCTTCGTCAGATCCAACA
GGAAAGGTGAAGTTGGTTTTCTTGCTGAGGACCGGAGGATCAACGTGGCTGTCACCCGTGCCCGACGCCA
CGTGGCGGTCATCTGTGACTCCCGTACTGTCAACAACCATGCATTTTTGAAGACCCTGGTGGAGTATTTC
ACACAGCATGGGGAAGTACGCACGGCCTTTGAGTATCTTGACGATATTGTCCCAGAAAACTATTCCCATG
AGAACTCCCAGGGTTCCAGCCACGCTGCCACCAAGCCCCAGGGACCTGCTACGTCCACCAGGACCGGAAG
CCAGCGGCAGGAGGGAGGCCAGGAGGCTGCAGCACCTGCCAGACAGGGCCGGAAGAAGCCGGCTGGGAAG
TCTCTGGCCTCTGAAGCTCCATCTCAGCCCAGCCTCAACGGAGGCAGCCCAGAGGGAGTGGAGAGCCAAG
ATGGCGTGGACCACTTCCGGGCCATGATAGTGGAGTTCATGGCCAGCAAGAAGATGCAGTTGGAGTTTCC
TCCTTCCCTCAATTCCCACGACAGGCTGCGGGTCCACCAAATAGCCGAGGAGCACGGGCTGAGGCACGAC
AGTTCCGGGGAAGGGAAGAGGAGGTTCATCACTGTGAGCAAGAGGGCCCCGCGACCCCGAGCAGCCCTGG
GACCCCCAGCAGGGACCGGTGGCCCAGCCCCTCTCCAGCCAGTGCCCCCTACCCCTGCGCAGACAGAGCA
GCCTCCCAGGGAGCAGCGTGGCCCAGACCAGCCTGATCTGAGGACGCTGCACCTGGAGAGACTGCAGAGG
GTCAGGAGCGCGCAGGGGCAGCCCGCCAGCAAGGAGCAGCAGGCCTCAGGGCAGCAGAAACTTCCAGAAA
AGAAAAAGAAAAAAGCCAAAGGACATCCGGCCACAGATCTGCCCACGGAGGAGGACTTTGAGGCCCTGGT
TTCTGCCGCCGTTAAGGCTGATAACACCTGCGGCTTTGCCAAGTGCACAGCCGGCGTCACAACCCTGGGC
CAGTTCTGCCAGCTCTGCAGCCGCCGCTACTGCCTCAGCCACCACCTGCCCGAGATCCATGGCTGCGGTG
AGAGGGCTCGCGCCCATGCCCGGCAGAGAATCAGCCGGGAAGGGGTCCTCTATGCCGGCAGCGGGACCAA
GAACGGATCCCTGGACCCAGCCAAGAGGGCCCAGCTGCAGAGGAGGCTGGATAAGAAGCTGAGTGAGCTC
AGCAACCAGAGGACCAGCCGGAGGAAGGAGAGGGGGACGTGA

Translation (993 aa):
MASAAVESFVTKQLDLLELERDAEVEERRSWQENISLKELQSRGVCLLKLQVSSQRTGLYGRLLVTFEPR
RYGSAAALPSNSFTSGDIVGLYDAANEGSQLATGILTRVTQKSVTVAFDESHDFQLSLDRENSYRLLKLA
NDVTYRRLKKALIALKKYHSGPASSLIEVLFGRSAPSPASEIHPLTFFNTCLDTSQKEAVLFALSQKELA
IIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLGHPARLLESIQQHSL
DAVLARSDSAQIVADIRKDIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLA
TNTGASADGPLKLLPESYFDVVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSL
SLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLL
VDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQSLVHRHPELE
IKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVEYF
TQHGEVRTAFEYLDDIVPENYSHENSQGSSHAATKPQGPATSTRTGSQRQEGGQEAAAPARQGRKKPAGK
SLASEAPSQPSLNGGSPEGVESQDGVDHFRAMIVEFMASKKMQLEFPPSLNSHDRLRVHQIAEEHGLRHD
SSGEGKRRFITVSKRAPRPRAALGPPAGTGGPAPLQPVPPTPAQTEQPPREQRGPDQPDLRTLHLERLQR
VRSAQGQPASKEQQASGQQKLPEKKKKKAKGHPATDLPTEEDFEALVSAAVKADNTCGFAKCTAGVTTLG
QFCQLCSRRYCLSHHLPEIHGCGERARAHARQRISREGVLYAGSGTKNGSLDPAKRAQLQRRLDKKLSEL
SNQRTSRRKERGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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