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Report for CCDS24934.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24934.1 Public Mus musculus 11 Asgr2 23 108 98 CCDS HistoryNCBI Gene:11890Re-query CCDS DB by CCDS ID:24934.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24934.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102572.7 ENSMUSP00000099632.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102572.7Link to Ensembl Protein Viewer:ENSMUSP00000099632.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102572Re-query CCDS DB by Protein ID:ENSMUSP00000099632
Original member Current member NCBI NM_001313925.1 NP_001300854.1 Accepted alive Link to Nucleotide Sequence:NM_001313925.1Link to Protein Sequence:NP_001300854.1Re-query CCDS DB by Nucleotide ID:NM_001313925Re-query CCDS DB by Protein ID:NP_001300854Link to BLAST:NP_001300854.1
Original member Current member NCBI NM_001313926.1 NP_001300855.1 Accepted alive Link to Nucleotide Sequence:NM_001313926.1Link to Protein Sequence:NP_001300855.1Re-query CCDS DB by Nucleotide ID:NM_001313926Re-query CCDS DB by Protein ID:NP_001300855Link to BLAST:NP_001300855.1
Original member Current member NCBI NM_007493.3 NP_031519.1 Accepted alive Link to Nucleotide Sequence:NM_007493.3Link to Protein Sequence:NP_031519.1Re-query CCDS DB by Nucleotide ID:NM_007493Re-query CCDS DB by Protein ID:NP_031519Link to BLAST:NP_031519.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001300854.1 301 P24721 301 100% 0 0
NP_001300855.1 301 P24721 301 100% 0 0
NP_031519.1 301 P24721 301 100% 0 0

Chromosomal Locations for CCDS 24934.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 70093070 70093193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70096802 70096918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70097179 70097274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70097820 70097891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70098053 70098139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70098228 70098373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70105376 70105482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70105725 70105881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGGAGAAGGACTGTCAAGACATCCAGCAGCTGGACTCTGAGGAGAATGACCATCAGCTCAGTGGCGATG
ATGAACATGGCTCTCATGTGCAGGATCCTAGGATAGAAAATCCACACTGGAAAGGGCAGCCTCTTTCCAG
GCCCTTTCCTCAGCGCCTCTGCTCCACGTTCCGCCTCAGTCTGCTCGCCCTGGCCTTCAACATCCTCCTG
TTGGTGGTCATCTGTGTGGTTTCATCTCAAAGCATACAGCTGCAAGAAGAGTTTCGGACCCTGAAAGAAA
CCTTCAGCAACTTTTCCTCCAGCACCCTGATGGAGTTCGGGGCTCTGGACACCCTCGGAGGTAGCACAAA
CGCCATACTGACTTCCTGGTTAGCCCAACTGGAGGAGAAGCAGCAACAGCTAAAGGCAGACCATTCCACA
TTGCTCTTTCACCTGAAGCACTTCCCAATGGATCTGCGAACCCTGACCTGTCAGCTGGCGTACTTCCAGA
GCAATGGCACGGAATGCTGCCCTGTTAACTGGGTGGAGTTCGGGGGAAGCTGCTACTGGTTTTCTCGGGA
TGGGCTCACCTGGGCTGAGGCTGACCAGTACTGCCAGCTGGAGAACGCCCACCTGCTGGTCATCAACTCC
AGGGAGGAGCAGGACTTTGTTGTAAAGCACAGGAGCCAGTTTCATATTTGGATAGGTCTTACCGACAGGG
ATGGCTCCTGGAAATGGGTGGATGGAACTGATTATAGAAGCAACTACAGGAATTGGGCCTTCACTCAGCC
AGATAACTGGCAGGGCCATGAACAGGGTGGAGGTGAAGACTGTGCTGAAATCCTGTCAGATGGCCATTGG
AATGACAACTTCTGCCAGCAGGTGAACCGCTGGGTATGCGAAAAGAGACGGAACATCACCCACTAG

Translation (301 aa):
MEKDCQDIQQLDSEENDHQLSGDDEHGSHVQDPRIENPHWKGQPLSRPFPQRLCSTFRLSLLALAFNILL
LVVICVVSSQSIQLQEEFRTLKETFSNFSSSTLMEFGALDTLGGSTNAILTSWLAQLEEKQQQLKADHST
LLFHLKHFPMDLRTLTCQLAYFQSNGTECCPVNWVEFGGSCYWFSRDGLTWAEADQYCQLENAHLLVINS
REEQDFVVKHRSQFHIWIGLTDRDGSWKWVDGTDYRSNYRNWAFTQPDNWQGHEQGGGEDCAEILSDGHW
NDNFCQQVNRWVCEKRRNITH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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