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Report for CCDS30271.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30271.1 Public Mus musculus X Arx 23 108 98 CCDS HistoryNCBI Gene:11878Re-query CCDS DB by CCDS ID:30271.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30271.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046565.12 ENSMUSP00000049039.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046565.12Link to Ensembl Protein Viewer:ENSMUSP00000049039.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000046565Re-query CCDS DB by Protein ID:ENSMUSP00000049039
Original member Current member EBI ENSMUST00000113947.5 ENSMUSP00000109580.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113947.5Link to Ensembl Protein Viewer:ENSMUSP00000109580.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113947Re-query CCDS DB by Protein ID:ENSMUSP00000109580
Original member Current member NCBI NM_001305940.1 NP_001292869.1 Accepted alive Link to Nucleotide Sequence:NM_001305940.1Link to Protein Sequence:NP_001292869.1Re-query CCDS DB by Nucleotide ID:NM_001305940Re-query CCDS DB by Protein ID:NP_001292869Link to BLAST:NP_001292869.1
Original member Current member NCBI NM_007492.4 NP_031518.2 Accepted alive Link to Nucleotide Sequence:NM_007492.4Link to Protein Sequence:NP_031518.2Re-query CCDS DB by Nucleotide ID:NM_007492Re-query CCDS DB by Protein ID:NP_031518Link to BLAST:NP_031518.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001292869.1 564 O35085 564 100% 0 0
NP_031518.2 564 O35085 564 100% 0 0

Chromosomal Locations for CCDS 30271.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 93286728 93286923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93288543 93289425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93291862 93291907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93294610 93294938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93297163 93297403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1695 nt):
ATGAGCAATCAGTACCAGGAAGAGGGCTGCTCTGAGAGGCCGGAGTGCAAGAGTAAATCTCCAACTTTGC
TCTCCTCCTACTGCATCGACAGCATCCTGGGCCGGAGAAGCCCATGCAAAATGAGGCTTCTGGGAGCCGC
GCAGAGCTTGCCTGCCCCGCTGGCCAGCCGCGCTGACCAGGAAAAAGCCATGCAAGGCTCCCCCAAGAGC
AGCAGCGCCCCGTTCGAGGCTGAGCTGCACCTGCCACCCAAGCTGCGGCGCCTCTACGGCCCGGGCGGGG
GCCGCCTCCTCCAGGGCGCGGCGGCGGCGGCTGCAGCGGCGGCGGCGGCCGCAGCGGCGGCCACGGCCAC
TGGCACCGCAGGTCCCCGTGGAGAGGTTCCTCCACCGCCACCACCAGCTGCACGGCCAGGGGAGCGTCAG
GACAGCGCAGGGGCCGTGGCTGCCGCCGCTGCCGCCGCTGCCTGGGACACGCTCAAGATCAGCCAGGCGC
CGCAGGTGAGCATCAGTCGTAGCAAGTCGTACCGCGAGAACGGGGCGCCCTTCGTGCCCCCGCCGCCAGC
CCTGGACGAGCTGAGTGGCCCGGGGGGCGTCGCGCACCCCGAGGAGCGCCTCAGCGCGGCCAGCGGACCC
GGCAGTGCCCCCGCGGCGGGTGGTGGCACGGGCGCCGAGGACGACGAGGAGGAGCTGTTGGAGGATGAGG
AAGATGAAGAGGAGGAAGAGGAGCTGCTGGAGGACGACGACGAGGAGCTGCTGGAGGACGATGCCCGCGC
GCTGCTCAAGGAGCCCCGGCGCTGCTCGGTGGCCACCACCGGCACAGTGGCCGCCGCCGCCGCCGCTGCT
GCCGCCGCCGTGGCCACCGAGGGCGGGGAGCTGTCGCCCAAGGAAGAGCTGTTGCTGCACCCGGAGGACG
CCGAGGGCAAGGATGGTGAGGACAGCGTGTGCCTGTCGGCCGGCAGCGACTCGGAGGAGGGGCTGCTGAA
GCGCAAACAGAGGCGCTACCGCACCACGTTCACCAGTTACCAGCTGGAGGAACTGGAGCGGGCTTTCCAG
AAGACGCACTACCCTGACGTCTTCACCAGGGAGGAGCTGGCCATGAGGCTGGACCTGACAGAGGCCCGAG
TCCAGGTGTGGTTCCAGAACCGTCGGGCCAAGTGGCGCAAGCGGGAGAAGGCTGGCGCACAGACCCACCC
CCCGGGGCTGCCCTTTCCAGGGCCGCTCTCGGCTACCCACCCTCTCAGCCCCTACCTGGACGCCAGCCCC
TTTCCCCCGCATCACCCTGCGCTTGATTCGGCCTGGACCGCCGCGGCGGCGGCGGCTGCAGCTGCCTTCC
CGAGCCTACCTCCGCCCCCAGGCTCTGCTAGCCTGCCACCCAGCGGGGCGCCGCTGGGTCTGAGCACTTT
TCTAGGAGCAGCGGTGTTCCGCCACCCAGCCTTCATCAGCCCAGCATTTGGCAGGCTCTTTTCCACTATG
GCCCCCCTGACCAGCGCGTCGACTGCGGCTGCGCTCCTGAGACAGCCCACACCCGCGGTGGAGGGCGCAG
TGGCCTCGGGCGCGCTGGCCGACCCGGCCACCGCCGCGGCAGACAGACGCGCGTCAAGCATAGCCGCGCT
GAGGCTCAAGGCTAAGGAGCACGCCGCGCAGCTCACGCAGCTCAACATCCTGCCGGGCACCAGCACGGGG
AAGGAGGTGTGCTAA

Translation (564 aa):
MSNQYQEEGCSERPECKSKSPTLLSSYCIDSILGRRSPCKMRLLGAAQSLPAPLASRADQEKAMQGSPKS
SSAPFEAELHLPPKLRRLYGPGGGRLLQGAAAAAAAAAAAAAAATATGTAGPRGEVPPPPPPAARPGERQ
DSAGAVAAAAAAAAWDTLKISQAPQVSISRSKSYRENGAPFVPPPPALDELSGPGGVAHPEERLSAASGP
GSAPAAGGGTGAEDDEEELLEDEEDEEEEEELLEDDDEELLEDDARALLKEPRRCSVATTGTVAAAAAAA
AAAVATEGGELSPKEELLLHPEDAEGKDGEDSVCLSAGSDSEEGLLKRKQRRYRTTFTSYQLEELERAFQ
KTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGAQTHPPGLPFPGPLSATHPLSPYLDASP
FPPHHPALDSAWTAAAAAAAAAFPSLPPPPGSASLPPSGAPLGLSTFLGAAVFRHPAFISPAFGRLFSTM
APLTSASTAAALLRQPTPAVEGAVASGALADPATAAADRRASSIAALRLKAKEHAAQLTQLNILPGTSTG
KEVC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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