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Report for CCDS25890.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
25890.1 |
Public |
Mus musculus |
12 |
Arl4a |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:11861](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:25890.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 12 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 25890.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000101472.3 |
ENSMUSP00000099013.3 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000101472.3](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000099013.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000101472](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000099013](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000146905.1 |
ENSMUSP00000114458.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000146905.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000114458.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000146905](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000114458](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001039515.1 |
NP_001034604.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001039515.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001034604.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001039515](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001034604](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001034604.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_007487.3 |
NP_031513.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_007487.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_031513.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_007487](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_031513](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_031513.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 25890.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (603 nt): ATGGGGAATGGACTGTCAGACCAGACTTCCATCCTGTCCAGCCTGCCGTCCTTTCAGTCCTTTCACATTG TTATTCTGGGTTTGGACTGTGCTGGAAAGACAACAGTTTTATACAGGCTGCAGTTCAACGAATTTGTAAA TACCGTACCTACCAAAGGATTTAACACTGAGAAAATTAAGGTAACCTTGGGCAATTCCAAAACAGTCACT TTTCACTTCTGGGATGTAGGTGGTCAAGAGAAGTTAAGACCACTGTGGAAGTCATACACCCGATGCACAG ATGGTATTGTGTTTGTGGTGGACTCTGTCGATGTTGAGAGAATGGAAGAAGCCAAAACTGAACTTCATAA AATAACTAGGATATCCGAAAATCAGGGAGTCCCTGTGCTTATAGTTGCTAATAAACAAGACCTGAGGAAC TCGCTCTCTCTCTCAGAGATTGAGAAGTTGTTAGCAATGGGGGAACTGAGCTCATCGACTCCTTGGCATT TGCAGCCCACCTGTGCAATCATAGGAGATGGGCTAAAGGAAGGACTCGAGAAACTACATGATATGATAAT TAAAAGGAGAAAAATGTTGCGGCAACAGAAAAAGAAGAGATGA
Translation (200 aa): MGNGLSDQTSILSSLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIKVTLGNSKTVT FHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRN SLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKRRKMLRQQKKKR
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