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Report for CCDS21988.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21988.1 Public Mus musculus 7 Ric8a 23 108 98 CCDS HistoryNCBI Gene:101489Re-query CCDS DB by CCDS ID:21988.1Re-query CCDS DB by GeneID:101489See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21988.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026558.6 ENSMUSP00000026558.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026558.6Link to Ensembl Protein Viewer:ENSMUSP00000026558.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000026558Re-query CCDS DB by Protein ID:ENSMUSP00000026558
Original member Current member NCBI NM_053194.4 NP_444424.1 Accepted alive Link to Nucleotide Sequence:NM_053194.4Link to Protein Sequence:NP_444424.1Re-query CCDS DB by Nucleotide ID:NM_053194Re-query CCDS DB by Protein ID:NP_444424Link to BLAST:NP_444424.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444424.1 530 Q3TIR3 530 100% 0 0

Chromosomal Locations for CCDS 21988.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 140857471 140857554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140857845 140857892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140857982 140858572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140858863 140858954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140859439 140859589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140860877 140860972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140861073 140861217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140861296 140861440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140861840 140861959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140862311 140862431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGGAGCCCCGGGCAGTTGCGGATGCCTTGGAGACCGGAGAGGAAGATGCGGTGACAGAAGCTCTGCGGT
CGTTCAACCGGGAGCATTCTCAGAGCTTCACCTTCGATGATGCCCAGCAGGAGGACAGGAAGAGACTCGC
AAAGCTACTGGTCTCCGTCCTGGAGCAGGGCTTGTCACCAAAGCACCGTGTCACCTGGCTGCAGACTATC
CGAATCCTATCCCGAGACCGCAGCTGCCTGGACTCATTTGCCAGCCGCCAGAGCTTACATGCACTAGCCT
GCTATGCTGACATTACCGTCTCAGAGGAACCCATCCCACAGTCCCCAGACATGGATGTCCTCCTCGAGTC
TCTCAAATGCCTGTGTAATCTTGTGCTCAGCAGTCCAACAGCACAGATGCTAGCAGCAGAGGCTCGCCTG
GTGGTGAGGCTAGCGGAGCGTGTGGGACTGTACCGCAAGAGGAGCTATCCCCACGAAGTCCAGTTCTTTG
ACTTGAGGCTCCTTTTCCTGCTAACAGCCCTTCGCACGGATGTGCGCCAGCAACTGTTTCAGGAGCTGCA
CGGTGTACGCCTGCTGACTGATGCGCTGGAACTAACACTGGGCGTGGCCCCCAAAGAAAACCCTCCGGTG
ATGCTTCCAGCCCAAGAGACGGAGAGGGCCATGGAGATCCTCAAAGTGCTCTTTAATATCACCTTTGACT
CTGTCAAGAGGGAAGTTGATGAGGAAGATGCTGCCCTTTACCGGTACCTGGGGACTCTTCTGCGGCACTG
CGTGATGGTTGAAGCTGCTGGGGACCGCACAGAGGAGTTCCACGGCCACACGGTGAATCTCCTGGGGAAC
TTGCCCCTCAAGTGTTTGGATGTGCTTCTGGCCCTGGAGCTCCACGAAGGATCCTTAGAGTTCATGGGAG
TTAACATGGATGTGATCAGTGCCCTCCTCGCCTTCCTAGAGAAACGTCTGCACCAGACCCACAGGCTGAA
GGAATGTGTGGCACCTGTGCTGAACGTGTTGACAGAATGTGCCCGCATGCACCGTCCTGCCAGGAAGTTC
CTGAAGGCCCAGGTCCTGCCCCCTCTGAGGGATGTGAGGACTCGGCCTGAGGTGGGGGACCTGCTTCGAA
ACAAGCTTGTCCGCCTCATGACACACCTGGATACAGATGTGAAGAGAGTAGCTGCCGAGTTCCTCTTTGT
CTTATGTTCTGAAAGTGTGCCCCGATTCATCAAGTACACAGGCTACGGGAATGCTGCCGGCCTCCTGGCT
GCCAGGGGCCTCATGGCTGGGGGCCGACCCGAGGGCCAGTACTCAGAGGACGAGGACACGGACACAGAGG
AGTACAGGGAAGCCAAGGCCAGCATCAACCCTGTGACTGGAAGGGTGGAGGAGAAGCCGCCTAATCCTAT
GGAAGGCATGACAGAGGAGCAGAAGGAACATGAGGCCATGAAGCTAGTGAACATGTTTGACAAGCTCTCC
AGGCACAGAGTCATCCAACCCATGGGGATGAGTCCCAGGGGTCACCTCACTTCTCTGCAAGATGCGATGT
GTGAGACAATGGAGGGACAGCTCTCCTCAGACCCTGACTCAGATCCTGACTGA

Translation (530 aa):
MEPRAVADALETGEEDAVTEALRSFNREHSQSFTFDDAQQEDRKRLAKLLVSVLEQGLSPKHRVTWLQTI
RILSRDRSCLDSFASRQSLHALACYADITVSEEPIPQSPDMDVLLESLKCLCNLVLSSPTAQMLAAEARL
VVRLAERVGLYRKRSYPHEVQFFDLRLLFLLTALRTDVRQQLFQELHGVRLLTDALELTLGVAPKENPPV
MLPAQETERAMEILKVLFNITFDSVKREVDEEDAALYRYLGTLLRHCVMVEAAGDRTEEFHGHTVNLLGN
LPLKCLDVLLALELHEGSLEFMGVNMDVISALLAFLEKRLHQTHRLKECVAPVLNVLTECARMHRPARKF
LKAQVLPPLRDVRTRPEVGDLLRNKLVRLMTHLDTDVKRVAAEFLFVLCSESVPRFIKYTGYGNAAGLLA
ARGLMAGGRPEGQYSEDEDTDTEEYREAKASINPVTGRVEEKPPNPMEGMTEEQKEHEAMKLVNMFDKLS
RHRVIQPMGMSPRGHLTSLQDAMCETMEGQLSSDPDSDPD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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