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Report for CCDS19902.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19902.1 Public Mus musculus 6 Pdk4 23 108 98 CCDS HistoryNCBI Gene:27273Re-query CCDS DB by CCDS ID:19902.1Re-query CCDS DB by GeneID:27273See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19902.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019721.6 ENSMUSP00000019721.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019721.6Link to Ensembl Protein Viewer:ENSMUSP00000019721.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000019721Re-query CCDS DB by Protein ID:ENSMUSP00000019721
Original member Current member NCBI NM_013743.2 NP_038771.1 Accepted alive Link to Nucleotide Sequence:NM_013743.2Link to Protein Sequence:NP_038771.1Re-query CCDS DB by Nucleotide ID:NM_013743Re-query CCDS DB by Protein ID:NP_038771Link to BLAST:NP_038771.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038771.1 412 O70571 412 100% 0 0

Chromosomal Locations for CCDS 19902.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 5485449 5485592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5486678 5486791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5487064 5487174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5487379 5487477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5489135 5489211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5491070 5491147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5491591 5491677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5491830 5492014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5492706 5492777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5494890 5495031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5496033 5496162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1239 nt):
ATGAAGGCAGCCCGCTTCGTGATGCGCAGCGCCAGCTCGCTGAGCAGCGCCAGCCTGGTCCCCAGGGAGG
TCGAGCTGTTCTCCCGCTACAGCCCGTCCCCGCTGTCCATGAAGCAGCTGCTGGACTTTGGTTCAGAAAA
TGCCTGTGAAAGAACGTCCTTTGCTTTTCTGCGGCAAGAGCTGCCCGTCCGCCTGGCCAATATCCTGAAG
GAGATTGACATCCTGCCTGACCGCTTAGTGAACACTCCTTCGGTGCAGCTGGTGAAGAGCTGGTATATCC
AGAGCCTGATGGATTTGGTGGAGTTCCATGAGAAGAGCCCAGAAGACCAGAAAGCCCTGTCAGAGTTTGT
AGACACGCTGGTCAAAGTTCGAAACAGACATCATAATGTGGTCCCTACAATGGCTCAAGGCATCCTGGAG
TATAAAGACACCTGCACAGTGGACCCCGTTACCAATCAAAATCTTCAGTATTTTTTAGACCGGTTTTACA
TGAACCGCATTTCTACTCGGATGCTCATGAATCAGCACATCCTCATATTCAGTGACTCAAAGACGGGAAA
CCCAAGCCACATTGGAAGTATCGACCCAAACTGTGATGTGGTAGCAGTAGTCCAAGATGCCTTTGAGTGT
GCAAAGATGCTCTGCGACCAGTATTATCTAACATCGCCAGAATTAAACCTCACACAAGTCAATGGAAAAT
TTCCAGGCCAACCAATCCACATTGTGTACGTTCCTTCACACCTTCACCACATGCTCTTCGAACTCTTCAA
GAATGCCATGAGGGCCACGGTCGAGCATCAAGAAAACCGTCCTTCCTTGACCCCAGTAGAGGCCACTGTC
GTCTTGGGAAAAGAAGACCTTACAATCAAGATTTCTGACCGAGGAGGCGGTGTTCCTCTGAGGATTACTG
ACCGCCTCTTTAGTTACACGTACTCCACTGCTCCAACACCTGTGATGGACAATTCCCGGAATGCCCCTTT
GGCTGGTTTTGGTTATGGCTTGCCAATTTCTCGTCTCTACGCCAAGTATTTTCAAGGAGATCTGAATCTC
TACTCTATGTCAGGTTATGGGACAGACGCTATCATCTACTTAAAGGCTTTATCTTCTGAGTCTGTAGAAA
AGCTCCCAGTCTTTAACAAGTCAGCCTTCAAACATTATCAGATGAGCTCCGAAGCTGATGACTGGTGTAT
CCCAAGCAGGGAACCGAAGAACCTGGCGAAGGAGAAGCTGGCAGTGTGA

Translation (412 aa):
MKAARFVMRSASSLSSASLVPREVELFSRYSPSPLSMKQLLDFGSENACERTSFAFLRQELPVRLANILK
EIDILPDRLVNTPSVQLVKSWYIQSLMDLVEFHEKSPEDQKALSEFVDTLVKVRNRHHNVVPTMAQGILE
YKDTCTVDPVTNQNLQYFLDRFYMNRISTRMLMNQHILIFSDSKTGNPSHIGSIDPNCDVVAVVQDAFEC
AKMLCDQYYLTSPELNLTQVNGKFPGQPIHIVYVPSHLHHMLFELFKNAMRATVEHQENRPSLTPVEATV
VLGKEDLTIKISDRGGGVPLRITDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNL
YSMSGYGTDAIIYLKALSSESVEKLPVFNKSAFKHYQMSSEADDWCIPSREPKNLAKEKLAV


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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