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Report for CCDS19756.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19756.1 Public Mus musculus 5 Ift22 23 108 98 CCDS HistoryNCBI Gene:67286Re-query CCDS DB by CCDS ID:19756.1Re-query CCDS DB by GeneID:67286See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19756.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000200157.4 ENSMUSP00000143488.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000200157.4Link to Ensembl Protein Viewer:ENSMUSP00000143488.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000200157Re-query CCDS DB by Protein ID:ENSMUSP00000143488
Original member Current member NCBI NM_026073.3 NP_080349.1 Accepted alive Link to Nucleotide Sequence:NM_026073.3Link to Protein Sequence:NP_080349.1Re-query CCDS DB by Nucleotide ID:NM_026073Re-query CCDS DB by Protein ID:NP_080349Link to BLAST:NP_080349.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080349.1 185 Q9DAI2 185 100% 0 0

Chromosomal Locations for CCDS 19756.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 136908232 136908270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136911124 136911200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136911302 136911391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136911689 136911891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136912825 136912973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (558 nt):
ATGCTGAAGGCTAAGATCCTCTTCGTGGGCCCCTGCGAGAGCGGCAAAACAGTGTTGGCCAACTTTCTCA
CTGAATCTTCGGACATCACTGAATATAACCCAACACAAGGTGTGAGGATCCTAGAGTTTGAGAACCCACA
TGTCACCAGCAACAACAAAGGCACGGGCTGCGAATTCGAGCTCTGGGACTGTGGTGGCGACTCTAAGTTT
GAGTCCTGTTGGCCCGCTCTGATGAAGGATGCTCATGGAGTGGTGATCGTCTTCAATGCTGATATTCCAA
GCCACTTAAAGGAAATTGAAATGTGGTATTCCTGCTTTGTCCAGCAACAGTTCCTCCAAGACAGTCACTG
CATGCTTGTGGCCCACCACAAACCGGGCTCCGGAGGAGAAAGGGGCAGCCTGGCTTTGTCTCCCCCCTTG
AACAAGCTGAAGCTGGTGCACTCAAACCTGGAGGAAGACCCTGAGGAGGTCCGGGTGGAGTTCATCAAGT
ATTTAAAAAGCATCATCAACTCCATGTCAGAGAGCAGAGACCGCGAGGAGATGCTCATCATCACCTAG

Translation (185 aa):
MLKAKILFVGPCESGKTVLANFLTESSDITEYNPTQGVRILEFENPHVTSNNKGTGCEFELWDCGGDSKF
ESCWPALMKDAHGVVIVFNADIPSHLKEIEMWYSCFVQQQFLQDSHCMLVAHHKPGSGGERGSLALSPPL
NKLKLVHSNLEEDPEEVRVEFIKYLKSIINSMSESRDREEMLIIT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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