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Report for CCDS36286.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36286.1 Public Mus musculus 11 Spop 23 108 98 CCDS HistoryNCBI Gene:20747Re-query CCDS DB by CCDS ID:36286.1Re-query CCDS DB by GeneID:20747See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36286.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107722.7 ENSMUSP00000103350.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107722.7Link to Ensembl Protein Viewer:ENSMUSP00000103350.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107722Re-query CCDS DB by Protein ID:ENSMUSP00000103350
Original member Current member EBI ENSMUST00000107724.8 ENSMUSP00000103352.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107724.8Link to Ensembl Protein Viewer:ENSMUSP00000103352.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107724Re-query CCDS DB by Protein ID:ENSMUSP00000103352
Original member Current member NCBI NM_001359107.1 NP_001346036.1 Accepted alive Link to Nucleotide Sequence:NM_001359107.1Link to Protein Sequence:NP_001346036.1Re-query CCDS DB by Nucleotide ID:NM_001359107Re-query CCDS DB by Protein ID:NP_001346036Link to BLAST:NP_001346036.1
Original member Current member NCBI NM_025287.2 NP_079563.2 Accepted alive Link to Nucleotide Sequence:NM_025287.2Link to Protein Sequence:NP_079563.2Re-query CCDS DB by Nucleotide ID:NM_025287Re-query CCDS DB by Protein ID:NP_079563Link to BLAST:NP_079563.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346036.1 374 Q6ZWS8 374 100% 0 0
NP_079563.2 374 Q6ZWS8 374 100% 0 0

Chromosomal Locations for CCDS 36286.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 95470588 95470665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95471223 95471344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95474231 95474382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95474485 95474612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95481914 95482091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95485292 95485347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95485837 95485959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95490285 95490427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95491697 95491841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGTCAAGGGTTCCAAGTCCTCCACCTCCGGCAGAAATGTCGAGTGGTCCCGTTGCCGAGAGCTGGTGCT
ATACACAGATCAAGGTAGTGAAGTTCTCCTACATGTGGACCATCAATAACTTTAGTTTTTGCCGGGAGGA
AATGGGTGAAGTCATAAAAAGTTCAACTTTTTCATCAGGAGCCAATGATAAACTGAAATGGTGTTTGCGA
GTAAACCCGAAAGGGCTAGATGAAGAAAGCAAAGATTACCTGTCGCTTTACCTGTTGTTGGTCAGCTGTC
CAAAGAGTGAAGTTCGGGCAAAGTTCAAGTTCTCCATCCTGAATGCCAAGGGAGAAGAAACCAAAGCTAT
GGAGAGTCAGCGAGCTTATAGGTTCGTGCAAGGCAAAGACTGGGGATTCAAAAAATTCATCCGCAGAGAT
TTTCTCTTGGACGAGGCCAATGGGCTTCTCCCTGATGACAAGCTCACCCTCTTCTGTGAGGTGAGTGTAG
TACAAGACTCTGTCAATATTTCTGGGCAGAATACTATGAACATGGTAAAGGTTCCTGAATGCCGGTTGGC
AGATGAGTTAGGAGGGCTGTGGGAGAACTCTCGATTCACCGACTGCTGCTTGTGTGTGGCTGGTCAAGAA
TTCCAGGCTCACAAGGCTATCTTAGCAGCTCGGTCTCCAGTCTTCAGTGCCATGTTTGAACATGAAATGG
AGGAGAGCAAAAAGAATCGGGTTGAGATTAACGACGTGGAGCCTGAGGTGTTTAAGGAGATGATGTGCTT
CATCTACACGGGGAAGGCGCCGAACCTCGACAAGATGGCTGACGACTTGCTGGCAGCTGCCGATAAGTAC
GCCCTGGAGCGTCTGAAGGTCATGTGTGAGGACGCCCTCTGCAGTAACCTCTCTGTGGAGAACGCTGCAG
AGATTCTCATCCTGGCTGACCTCCACAGCGCAGATCAGCTGAAGACGCAGGCAGTTGATTTCATCAACTA
TCATGCTTCGGATGTCTTGGAGACCTCTGGGTGGAAGTCAATGGTGGTGTCACATCCCCACTTAGTGGCA
GAAGCATACCGTTCTCTGGCTTCAGCACAGTGCCCTTTCCTGGGGCCCCCACGCAAACGCCTGAAGCAAT
CCTAA

Translation (374 aa):
MSRVPSPPPPAEMSSGPVAESWCYTQIKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLR
VNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRD
FLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQE
FQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKY
ALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKSMVVSHPHLVA
EAYRSLASAQCPFLGPPRKRLKQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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