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Report for CCDS13319.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13319.1 Public Homo sapiens 20 L3MBTL1 24 110 108 CCDS HistoryNCBI Gene:26013Re-query CCDS DB by CCDS ID:13319.1Re-query CCDS DB by GeneID:26013See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13319.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373135.8 ENSP00000362227.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373135.8Link to Ensembl Protein Viewer:ENSP00000362227.3Re-query CCDS DB by Nucleotide ID:ENST00000373135Re-query CCDS DB by Protein ID:ENSP00000362227
Original member Current member NCBI NM_015478.7 NP_056293.4 Accepted alive Link to Nucleotide Sequence:NM_015478.7Link to Protein Sequence:NP_056293.4Re-query CCDS DB by Nucleotide ID:NM_015478Re-query CCDS DB by Protein ID:NP_056293Link to BLAST:NP_056293.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056293.4 772 Q9Y468-1 772 100% 0 0

Chromosomal Locations for CCDS 13319.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 43514545 43514776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43515009 43515159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43515292 43515415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43516093 43516177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43528657 43528745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43529264 43529368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43530284 43530419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43530798 43530889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43532773 43532924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43533342 43533418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43534008 43534093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43534284 43534394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43534828 43534942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43535837 43535936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43536097 43536294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43536409 43536458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43540151 43540308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43540753 43540815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43540934 43541128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2319 nt):
ATGAGGCGAAGAGAGGGCCATGGCACCGACTCCGAGATGGGTCAAGGACCCGTACGGGAGTCGCAATCCT
CAGACCCTCCCGCGCTCCAGTTCCGGATAAGCGAGTATAAGCCGCTGAACATGGCGGGAGTGGAGCAGCC
CCCGAGCCCCGAGCTGCGGCAGGAAGGCGTGACCGAATACGAAGATGGCGGGGCCCCGGCGGGAGATGGC
GAGGCGGGCCCCCAACAGGCGGAGGACCACCCCCAGAATCCTCCAGAAGATCCCAATCAGGACCCCCCAG
AGGATGATAGCACCTGTCAGTGCCAGGCGTGCGGGCCTCACCAAGCCGCGGGTCCAGATCTTGGTTCCTC
TAATGATGGCTGCCCTCAGCTGTTCCAGGAGCGGTCAGTCATAGTGGAGAACTCCTCAGGCTCTACCAGC
GCTTCTGAGCTCCTCAAACCCATGAAGAAGAGGAAGCGCAGGGAATACCAGAGCCCATCAGAGGAGGAGT
CGGAGCCAGAGGCCATGGAGAAGCAAGAAGAAGGAAAGGACCCAGAGGGACAACCCACTGCTAGCACCCC
AGAGAGTGAGGAGTGGAGCAGCAGCCAGCCTGCAACAGGTGAGAAGAAGGAATGCTGGTCGTGGGAGTCC
TACCTAGAGGAGCAGAAGGCCATTACTGCTCCAGTCAGCCTCTTCCAGGACTCCCAGGCAGTCACTCACA
ACAAGAATGGCTTCAAACTGGGCATGAAGTTGGAAGGCATTGACCCTCAACACCCGTCCATGTACTTCAT
CCTCACCGTGGCTGAGGTATGTGGCTATCGCCTACGCCTGCACTTTGATGGGTATTCTGAGTGCCATGAC
TTCTGGGTCAATGCCAACTCCCCTGACATTCACCCTGCTGGCTGGTTCGAGAAGACGGGCCACAAGCTGC
AGCCTCCCAAAGGTTACAAGGAGGAGGAGTTCAGCTGGAGCCAGTACCTGCGCAGCACAAGAGCTCAGGC
TGCCCCCAAGCACCTGTTTGTGAGCCAGAGCCACAGTCCCCCACCCCTGGGCTTCCAGGTGGGCATGAAG
CTGGAGGCTGTTGACCGCATGAACCCGTCCCTTGTCTGCGTGGCCAGTGTGACCGATGTGGTGGACAGCC
GCTTCCTGGTGCACTTTGACAACTGGGATGATACTTATGACTACTGGTGTGATCCCAGCAGCCCCTACAT
CCACCCAGTGGGCTGGTGCCAGAAGCAAGGAAAGCCCCTCACCCCTCCACAAGACTACCCAGACCCTGAT
AACTTCTGTTGGGAGAAATATCTGGAAGAAACTGGGGCCTCTGCTGTCCCCACCTGGGCCTTCAAGGTGC
GACCCCCTCACAGCTTCCTGGTCAATATGAAGCTGGAGGCTGTGGACCGCAGGAACCCAGCCCTGATTCG
CGTGGCCAGCGTGGAGGATGTGGAGGACCATCGGATAAAGATCCACTTTGATGGCTGGAGTCATGGCTAT
GATTTCTGGATCGACGCTGACCACCCAGACATCCACCCTGCCGGCTGGTGCTCCAAGACAGGACATCCCC
TGCAGCCTCCTCTCGGACCCAGAGAGCCCAGCTCTGCCTCCCCTGGGGGCTGTCCCCCTCTCAGCTATAG
GAGCCTGCCCCACACTAGGACCTCCAAATACAGCTTTCACCACCGGAAGTGCCCCACTCCTGGTTGCGAC
GGCTCTGGCCATGTCACAGGCAAGTTCACAGCTCACCATTGCCTCTCAGGCTGCCCACTGGCTGAGAGGA
ACCAGAGCCGGCTGAAAGCGGAGCTGTCTGACTCGGAGGCCTCAGCCCGCAAGAAGAACCTCTCAGGCTT
CTCCCCAAGGAAGAAGCCTCGCCATCACGGCCGAATTGGACGCCCTCCGAAGTATCGAAAGATTCCGCAG
GAAGATTTCCAGACCCTCACGCCCGATGTCGTGCACCAGTCCCTCTTCATGTCAGCCCTGTCGGCCCACC
CTGACCGCTCACTCTCAGTGTGCTGGGAGCAGCACTGCAAGCTCCTGCCAGGAGTAGCGGGCATCTCAGC
CTCGACAGTCGCCAAGTGGACCATCGATGAGGTCTTCGGCTTTGTTCAGACCCTGACAGGTTGTGAGGAC
CAAGCACGCCTCTTCAAAGACGAGGCAAGAATAGTCAGAGTGACCCATGTATCTGGGAAGACTCTAGTCT
GGACTGTGGCCCAGCTTGGGGACCTTGTGTGCTCAGATCATCTTCAGGAAGGAAAAGGCATCCTGGAGAC
AGGAGTCCATTCACTCCTCTGCTCTCTACCCACTCATTTGCTTGCCAAACTTAGCTTTGCCAGTGATAGT
CAATATTAA

Translation (772 aa):
MRRREGHGTDSEMGQGPVRESQSSDPPALQFRISEYKPLNMAGVEQPPSPELRQEGVTEYEDGGAPAGDG
EAGPQQAEDHPQNPPEDPNQDPPEDDSTCQCQACGPHQAAGPDLGSSNDGCPQLFQERSVIVENSSGSTS
ASELLKPMKKRKRREYQSPSEEESEPEAMEKQEEGKDPEGQPTASTPESEEWSSSQPATGEKKECWSWES
YLEEQKAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDGYSECHD
FWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSHSPPPLGFQVGMK
LEAVDRMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPD
NFCWEKYLEETGASAVPTWAFKVRPPHSFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGY
DFWIDADHPDIHPAGWCSKTGHPLQPPLGPREPSSASPGGCPPLSYRSLPHTRTSKYSFHHRKCPTPGCD
GSGHVTGKFTAHHCLSGCPLAERNQSRLKAELSDSEASARKKNLSGFSPRKKPRHHGRIGRPPKYRKIPQ
EDFQTLTPDVVHQSLFMSALSAHPDRSLSVCWEQHCKLLPGVAGISASTVAKWTIDEVFGFVQTLTGCED
QARLFKDEARIVRVTHVSGKTLVWTVAQLGDLVCSDHLQEGKGILETGVHSLLCSLPTHLLAKLSFASDS
QY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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