NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS47669.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47669.1 Public Homo sapiens 7 AP1S1 24 110 108 CCDS HistoryNCBI Gene:1174Re-query CCDS DB by CCDS ID:47669.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47669.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337619.11 ENSP00000336666.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000337619.11Link to Ensembl Protein Viewer:ENSP00000336666.5Re-query CCDS DB by Nucleotide ID:ENST00000337619Re-query CCDS DB by Protein ID:ENSP00000336666
Original member Current member EBI ENST00000443943.5 ENSP00000410780.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000443943.5Link to Ensembl Protein Viewer:ENSP00000410780.1Re-query CCDS DB by Nucleotide ID:ENST00000443943Re-query CCDS DB by Protein ID:ENSP00000410780
Original member Current member NCBI NM_001283.5 NP_001274.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001283.5Link to Protein Sequence:NP_001274.1Re-query CCDS DB by Nucleotide ID:NM_001283Re-query CCDS DB by Protein ID:NP_001274Link to BLAST:NP_001274.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001274.1 158 P61966 158 100% 0 0

Chromosomal Locations for CCDS 47669.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 101154515 101154517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101156594 101156772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101157377 101157485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101159059 101159196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101160519 101160566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGATGCGGTTCATGCTATTATTCAGCCGGCAGGGAAAACTGCGGCTGCAAAAATGGTACCTGGCCACTT
CGGACAAGGAACGGAAGAAGATGGTGCGCGAGCTCATGCAGGTTGTCCTGGCTCGAAAGCCCAAGATGTG
CAGCTTCCTGGAGTGGAGGGACCTCAAAGTTGTCTATAAGAGATATGCCAGCCTCTACTTCTGCTGCGCC
ATCGAGGGCCAAGACAATGAGCTCATCACACTGGAGCTGATCCACCGATACGTGGAGCTCTTAGACAAAT
ACTTTGGCAGTGTGTGCGAGCTGGACATCATCTTCAACTTTGAGAAGGCCTACTTCATCCTGGATGAGTT
TTTGATGGGGGGGGATGTCCAGGACACCTCCAAGAAGAGTGTGCTGAAAGCCATCGAGCAGGCTGACCTA
CTGCAAGAGGAGGATGAGTCGCCACGGAGTGTGCTGGAGGAGATGGGTTTGGCATAG

Translation (158 aa):
MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCA
IEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADL
LQEEDESPRSVLEEMGLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH