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Report for CCDS2640.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2640.1 Public Homo sapiens 3 RPL15 24 110 108 CCDS HistoryNCBI Gene:6138Re-query CCDS DB by CCDS ID:2640.1Re-query CCDS DB by GeneID:6138See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2640.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000307839.10 ENSP00000309334.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000307839.10Link to Ensembl Protein Viewer:ENSP00000309334.5Re-query CCDS DB by Nucleotide ID:ENST00000307839Re-query CCDS DB by Protein ID:ENSP00000309334
Original member Current member EBI ENST00000354811.5 ENSP00000346867.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000354811.5Link to Ensembl Protein Viewer:ENSP00000346867.5Re-query CCDS DB by Nucleotide ID:ENST00000354811Re-query CCDS DB by Protein ID:ENSP00000346867
Original member Current member EBI ENST00000415719.5 ENSP00000388529.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000415719.5Link to Ensembl Protein Viewer:ENSP00000388529.1Re-query CCDS DB by Nucleotide ID:ENST00000415719Re-query CCDS DB by Protein ID:ENSP00000388529
Original member Current member EBI ENST00000413699.7 ENSP00000416692.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000413699.7Link to Ensembl Protein Viewer:ENSP00000416692.1Re-query CCDS DB by Nucleotide ID:ENST00000413699Re-query CCDS DB by Protein ID:ENSP00000416692
Original member Current member EBI ENST00000611050.4 ENSP00000483260.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611050.4Link to Ensembl Protein Viewer:ENSP00000483260.1Re-query CCDS DB by Nucleotide ID:ENST00000611050Re-query CCDS DB by Protein ID:ENSP00000483260
Original member Current member EBI ENST00000644185.1 ENSP00000493759.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000644185.1Link to Ensembl Protein Viewer:ENSP00000493759.1Re-query CCDS DB by Nucleotide ID:ENST00000644185Re-query CCDS DB by Protein ID:ENSP00000493759
Original member Current member NCBI NM_001253379.2 NP_001240308.1 Accepted alive Link to Nucleotide Sequence:NM_001253379.2Link to Protein Sequence:NP_001240308.1Re-query CCDS DB by Nucleotide ID:NM_001253379Re-query CCDS DB by Protein ID:NP_001240308Link to BLAST:NP_001240308.1
Original member Current member NCBI NM_001253380.2 NP_001240309.1 Accepted alive Link to Nucleotide Sequence:NM_001253380.2Link to Protein Sequence:NP_001240309.1Re-query CCDS DB by Nucleotide ID:NM_001253380Re-query CCDS DB by Protein ID:NP_001240309Link to BLAST:NP_001240309.1
Original member Current member NCBI NM_001253382.2 NP_001240311.1 Accepted alive Link to Nucleotide Sequence:NM_001253382.2Link to Protein Sequence:NP_001240311.1Re-query CCDS DB by Nucleotide ID:NM_001253382Re-query CCDS DB by Protein ID:NP_001240311Link to BLAST:NP_001240311.1
Original member Current member NCBI NM_001253383.3 NP_001240312.1 Accepted alive Link to Nucleotide Sequence:NM_001253383.3Link to Protein Sequence:NP_001240312.1Re-query CCDS DB by Nucleotide ID:NM_001253383Re-query CCDS DB by Protein ID:NP_001240312Link to BLAST:NP_001240312.1
Original member Current member NCBI NM_002948.5 NP_002939.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002948.5Link to Protein Sequence:NP_002939.2Re-query CCDS DB by Nucleotide ID:NM_002948Re-query CCDS DB by Protein ID:NP_002939Link to BLAST:NP_002939.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001240308.1 204 P61313-1 204 100% 0 0
NP_001240309.1 204 P61313-1 204 100% 0 0
NP_001240311.1 204 P61313-1 204 100% 0 0
NP_001240312.1 204 P61313-1 204 100% 0 0
NP_002939.2 204 P61313-1 204 100% 0 0

Chromosomal Locations for CCDS 2640.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 23917860 23918031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 23918440 23918576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 23919196 23919501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGGGTGCATACAAGTACATCCAGGAGCTATGGAGAAAGAAGCAGTCTGATGTCATGCGCTTTCTTCTGA
GGGTCCGCTGCTGGCAGTACCGCCAGCTCTCTGCTCTCCACAGGGCTCCCCGCCCCACCCGGCCTGATAA
AGCGCGCCGACTGGGCTACAAGGCCAAGCAAGGTTACGTTATATATAGGATTCGTGTTCGCCGTGGTGGC
CGAAAACGCCCAGTTCCTAAGGGTGCAACTTACGGCAAGCCTGTCCATCATGGTGTTAACCAGCTAAAGT
TTGCTCGAAGCCTTCAGTCCGTTGCAGAGGAGCGAGCTGGACGCCACTGTGGGGCTCTGAGAGTCCTGAA
TTCTTACTGGGTTGGTGAAGATTCCACATACAAATTTTTTGAGGTTATCCTCATTGATCCATTCCATAAA
GCTATCAGAAGAAATCCTGACACCCAGTGGATCACCAAACCAGTCCACAAGCACAGGGAGATGCGTGGGC
TGACATCTGCAGGCCGAAAGAGCCGTGGCCTTGGAAAGGGCCACAAGTTCCACCACACTATTGGTGGCTC
TCGCCGGGCAGCTTGGAGAAGGCGCAATACTCTCCAGCTCCACCGTTACCGCTAA

Translation (204 aa):
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGG
RKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHK
AIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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