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Report for CCDS42562.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42562.1 Public Homo sapiens 19 FAM98C 24 110 108 CCDS HistoryNCBI Gene:147965Re-query CCDS DB by CCDS ID:42562.1Re-query CCDS DB by GeneID:147965See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42562.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000252530.10 ENSP00000252530.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000252530.10Link to Ensembl Protein Viewer:ENSP00000252530.4Re-query CCDS DB by Nucleotide ID:ENST00000252530Re-query CCDS DB by Protein ID:ENSP00000252530
Original member Current member NCBI NM_174905.4 NP_777565.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_174905.4Link to Protein Sequence:NP_777565.3Re-query CCDS DB by Nucleotide ID:NM_174905Re-query CCDS DB by Protein ID:NP_777565Link to BLAST:NP_777565.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_777565.3 349 Q17RN3-1 349 100% 0 0

Chromosomal Locations for CCDS 42562.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 38403154 38403218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38403338 38403486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38403560 38403694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38404908 38405113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38405344 38405421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38405519 38405635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38406910 38407077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38408751 38408882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1050 nt):
ATGGAGGCGGTGAAGGCGGAAGCGTGGGAGGGGGCCGCGGTGGCCCAGGACCTGCTGGCTCTGGGGTATG
GAGGTGTCCCGGGGGCGGCGTCGCGGGGCGCCTCATGCCCAGACTTCAGGGGGCTGTGCGTGCGGCTGGC
GGCGGAGCTGGCGACGCTGGGCGCCCTCGAGCAGCAGCGAGAGGCGGGCGCGGAGGTGCTGAGCGCCGGC
GACGGCCCTGGCGCGGAGGAGGACTTTCTGCGGCAGCTCGGCAGCCTGCTGCGGGAGCTGCACTGCCCGG
ATCGCGCGCTCTGCGGCGGGGATGGCGCGGCTGCGCTTCGGGAACCCGGTGCCGGACTGCGCCTGCTGCG
CTTTCTCTGCTCAGAGCTCCAAGCCACCCGCCTCCTGTGCCTCCGCTCTCTGCTGGATCCGAGTCCTAGG
CCACCCCTTGGTGAAGGGGTAGTGGAGGGAGCCGGCATGGTCCAAGAACTGGACCTTACCCTCCAAGCCC
TGGGGCTGCCCAGACCTGCACCAGGGACCCCCGCCAGCCAGCTGCTGCAGGAGTTGCATGCTAAGATCTC
AGAGCTGCAGCCTTCTCTGCCCCCAGGGTCCCTGCAGCCCCTCCTCAGCTGCTCGCTAGATGCACCCAGA
TGGGAAGCGTTGGAGTCTCTGTCCCAAAGCCTCAGAGATCAGTACCGCTGCCGCCGCTGCCTCCTCCTCA
AGCGCCTTGACCTCACTACATCTGCTTTCCACTGGAGTGACCGGGCAGAGGCCCAAGGAGAGGCCATGAG
GGCAGTGCTGATCCCAATTCGAGAGGTTCTGACCCCAGAATCGGACATCTCCATTGCACACGTTCTGGCT
GCCCGAGCCGACCTGTCTTGTCTCGTCCCAGCCACCAGCGTGGCTGTCCGCAGAGGGACCTGCTGTGCCA
TCAACAAGGTGCTTATGGGCAACGTTCCAGACCGGGGGGGCCGCCCAAATGAGCTGGAGCCTCCCATGCC
CACCTGGAGGAGCCGAAGAGAGGATGGAGGCCCCCAGTGTTGGGGTCGCAAGAAGAAGAAGAAGAAGTAA

Translation (349 aa):
MEAVKAEAWEGAAVAQDLLALGYGGVPGAASRGASCPDFRGLCVRLAAELATLGALEQQREAGAEVLSAG
DGPGAEEDFLRQLGSLLRELHCPDRALCGGDGAAALREPGAGLRLLRFLCSELQATRLLCLRSLLDPSPR
PPLGEGVVEGAGMVQELDLTLQALGLPRPAPGTPASQLLQELHAKISELQPSLPPGSLQPLLSCSLDAPR
WEALESLSQSLRDQYRCRRCLLLKRLDLTTSAFHWSDRAEAQGEAMRAVLIPIREVLTPESDISIAHVLA
ARADLSCLVPATSVAVRRGTCCAINKVLMGNVPDRGGRPNELEPPMPTWRSRREDGGPQCWGRKKKKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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