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Report for CCDS37774.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37774.1 Public Mus musculus 18 Pcdha1 23 108 98 CCDS HistoryNCBI Gene:116731Re-query CCDS DB by CCDS ID:37774.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37774.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070797.6 ENSMUSP00000068828.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070797.6Link to Ensembl Protein Viewer:ENSMUSP00000068828.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000070797Re-query CCDS DB by Protein ID:ENSMUSP00000068828
Original member Current member NCBI NM_054072.1 NP_473413.1 Accepted alive Link to Nucleotide Sequence:NM_054072.1Link to Protein Sequence:NP_473413.1Re-query CCDS DB by Nucleotide ID:NM_054072Re-query CCDS DB by Protein ID:NP_473413Link to BLAST:NP_473413.1

Chromosomal Locations for CCDS 37774.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 36930285 36932672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37156155 37156213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37159265 37159353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37184946 37185256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2847 nt):
ATGCTGTTTTCCAGGCTCCGAGGCCTGAGAGCCCGGCGCCTGCTCTTGTTCTCGCTTCTGTTTCTTGCAG
CCTGGGAGGCAGGGAGCGGCCAGATTCATTACTCTGTCCCAGAGGAAGCCAAACACGGCACCTTTGTGGG
CCGCATCGCGCAGGACCTGGGGCTGGAGCTGACGGAGCTGGTGCCCCGCCTATTCAGGGTGGCGTCCAAG
GATCGCGGGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGGG
AGGAGCTGTGCGGGCGGAGCGCGGAGTGTAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGT
TTTCCACGTGGAGGTGAAGGTTAAAGATATTAATGATAACCCACCAGTTTTCAAAGGCGCAGAGCAAAGG
ATATTTATTCCTGAAAACAGACAACTAGATTCACGGTTTCCACTAGAGGGCGCCGTGGACGCAGACATTG
GTGCCAATTCTCTTTTAACTTACACGCTGAGCCCCACTGATTACTTTTCTTTAAAGGTAGAGACAACAGA
CGAACTCAGTAAATCCCTTTCGCTTGAACTGAGAAAATCTTTGGATAGAGAAGAAACACCAGAACTTCAG
TTATTACTGACAGCCACCGACGGGGGCAAGCCAGAGCTGGAGGGGACAGTTCGGCTGCAGATTACTGTGC
TCGATGTTAATGACAACGCCCCACTGTTTGACCAGGCCATCTACAGAGCACAGTTAGTAGAATCTACAGT
GAATGGGACATTAGTGACGACGTTAAATGCCACTGACGCTGATGAAGGTGTTAATGGTGAAGTTGTGTTT
TCCTTTGGCAATGACGTTTCTCTTGACATTCAAGAAAAATTCAATGTGGATTCTCTTTCAGGAGAAATTA
GAGTGATCGGTGATCTAGATTATGAAAAAACAAAATCCTATGAAATTCAAATAAAGGCAGTTGATAAAGG
GACTCCCTCCATGTCAAATCACTGCAAGGTTTTGGTGAAAGTACTGGATATAAATGATAATGCTCCAGAG
CTGTCGATCACATCCTTGTCTTTGCCCATCAAAGAGGATACTCCACTTAACACTATCATCGCACTCATCA
AGGTGTCCGACATCGACTCAGGTGTCAACGGGCAGGTGACCTGCTCCCTAACTCCTCATGTCCCTTTCAA
GTTGGTGTCCACCTTCAAGAATTACTATTCGCTTGTGCTGGACAGCACCCTGGACCGAGAGACCACAGCG
GACTATAAGGTGGTGGTGACAGCCCGCGACGGGGGCTCGCCCTCGCTGTGGGCCACGGCCAGCGTGTCTG
TGGAGGTGGCTGACGTGAACGACAATGCTCCAGTGTTCGCGCAGCCCGAATACACTGTGTTCGTGAAGGA
GAACAACCCGCCTGGTGCGCACATCTTCACGGTGTCAGCGATGGACGCGGATGCGCAGGAGAATGCGCTG
GTGTCCTACTCGCTGGTGGAGCGGAGGGTGGGCGAGCGCTTGCTGTCGAGCTATGTGTCTGTGCACGCGG
AGAGCGGCAAGGTGTTCGCGCTGCAGCCTCTGGACCATGAGGAGCTGGAGCTGCTGCAGTTCCAGGTGAG
CGCGCGGGATGCTGGTGTGCCTGCCCTGGGCAGCAATGTGACTCTGCAGGTGTTTGTGCTGGACGAGAAT
GACAATCCACCCACACTGCTGGGGCCTCACGCAGGCAGCGCAGTGAGCGAACTGGTGTCACGGACAATGG
GTGCAGGGCATGTGGTGACAAAGGTGCGCGCGGTGGACGCGGACTCTGGCTACAATGCGTGGCTGTCCTA
TGAACTACAACCTCCTACAGGTGGTGCGCGCAACCCGTTTCGCGTGGGTCTGTACACTGGTGAGATTAGC
ACCACACGCTCCTTAGATGAGGTCGATGTTCCACGACAGCGTCTCTTGGTGCTGGTGAAGGACCATGGAG
AGCCAATGCTGACTGCTACCGCTACCGTGTTGGTATCTCTGGTGGAAAGCAGTCCGATTCAGAAAGCCTC
TTTGCCTGTATTAACCGGTGCAGTGGGTTCCAAGGCATCGCTGGTGGATGTCAACGTGTACCTGATCATC
GCCATCTGTGCCGTGTCCAGCCTGTTAGTGCTCACTTTGCTTCTGTACACAGCGCTGCGCTGCTCCGCGA
CACCCACTGATGGAGCCTGTGGTCCGGGGAAGCCCATGCTGGTGTGCTCCAGCGCGGTGGGGAGCTGGTC
ATACTCGCAGCAGAGGCGACAGAAGGTGTGCTCTGGAGAGGGTCCACCTAAGACCGACCTCATGGCCTTC
AGCCCGGGTTTAGCCCCAGGTTTGAACATAGCGGAAAGAAGTGACCACGCAGAAGTAAATTCAGATCTTT
CTGGTAATCCCCGGCAGCCCAACCCTGACTGGCGCTACTCTGCCTCGCTAAGAGCAGGCATGCACAGCTC
TGTGCACCTGGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTA
TCCAGTGCAACACCAGAACCTGAGGCAGGAGAGGTGTCCCCTCCGGTGGGCGCCGGTGTCAACAGCAACA
GCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAGTCCGGTCCCGGTGAGTTGCCAGACAAATTCAT
TATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTGCTAACAACCAAATTGACAAAAGCGAT
TTTATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGG
AGAAAAAAGAGAAAGGGAACAGCACGACGGACAACAGTGACCAGTGA

Translation (948 aa):
MLFSRLRGLRARRLLLFSLLFLAAWEAGSGQIHYSVPEEAKHGTFVGRIAQDLGLELTELVPRLFRVASK
DRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVKVKDINDNPPVFKGAEQR
IFIPENRQLDSRFPLEGAVDADIGANSLLTYTLSPTDYFSLKVETTDELSKSLSLELRKSLDREETPELQ
LLLTATDGGKPELEGTVRLQITVLDVNDNAPLFDQAIYRAQLVESTVNGTLVTTLNATDADEGVNGEVVF
SFGNDVSLDIQEKFNVDSLSGEIRVIGDLDYEKTKSYEIQIKAVDKGTPSMSNHCKVLVKVLDINDNAPE
LSITSLSLPIKEDTPLNTIIALIKVSDIDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSTLDRETTA
DYKVVVTARDGGSPSLWATASVSVEVADVNDNAPVFAQPEYTVFVKENNPPGAHIFTVSAMDADAQENAL
VSYSLVERRVGERLLSSYVSVHAESGKVFALQPLDHEELELLQFQVSARDAGVPALGSNVTLQVFVLDEN
DNPPTLLGPHAGSAVSELVSRTMGAGHVVTKVRAVDADSGYNAWLSYELQPPTGGARNPFRVGLYTGEIS
TTRSLDEVDVPRQRLLVLVKDHGEPMLTATATVLVSLVESSPIQKASLPVLTGAVGSKASLVDVNVYLII
AICAVSSLLVLTLLLYTALRCSATPTDGACGPGKPMLVCSSAVGSWSYSQQRRQKVCSGEGPPKTDLMAF
SPGLAPGLNIAERSDHAEVNSDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTV
SSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPANNQIDKSD
FITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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