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Report for CCDS29838.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29838.1 Public Mus musculus 19 Abcc2 23 108 98 CCDS HistoryNCBI Gene:12780Re-query CCDS DB by CCDS ID:29838.1Re-query CCDS DB by GeneID:12780See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29838.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026208.5 ENSMUSP00000026208.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026208.5Link to Ensembl Protein Viewer:ENSMUSP00000026208.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000026208Re-query CCDS DB by Protein ID:ENSMUSP00000026208
Original member Current member NCBI NM_013806.2 NP_038834.2 Accepted alive Link to Nucleotide Sequence:NM_013806.2Link to Protein Sequence:NP_038834.2Re-query CCDS DB by Nucleotide ID:NM_013806Re-query CCDS DB by Protein ID:NP_038834Link to BLAST:NP_038834.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038834.2 1543 Q8VI47 1543 100% 0 0

Chromosomal Locations for CCDS 29838.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 43782404 43782433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43784183 43784356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43796452 43796577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43798061 43798195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43798407 43798514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43799090 43799145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43800537 43800768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43803643 43803806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43804936 43805113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43807010 43807264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43808650 43808715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43810471 43810608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43811116 43811262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43812431 43812515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43813190 43813256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43814688 43814814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43816797 43816973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43818014 43818181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43819355 43819535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43821619 43821745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43822007 43822142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43822975 43823194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43823338 43823492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43825835 43825990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43826584 43826783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43827881 43828007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43829812 43829913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43830411 43830554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43832045 43832203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43833865 43834031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43836584 43836778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43837428 43837557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4632 nt):
ATGGACGAATTCTGCAACTCTACTTTTTGGAATCTCTCATTATTGAAAAGTCCGGAAGCCGACCTGCCTC
TTTGTTTTGAACAAACTGTTCTTGTGTGGATTCCCTTGGGCTTTCTTTGGCTCTTGGCGCCTTGGCAACT
TTACAGAATATACAGATCCAGGACCAAGAGATTTGCTATAACTAAATTCTACCTTGCCAAGCAGGTGTTC
GTTGTGTGTCTTCTTATTTTAGCAGCCATAGACCTGTCTCTTGCACTCACAGAAGATACTGGACAAGCCA
CAATTCCTCCTGTTAAATATACAAATCCAATTCTCTACCTATGCACTTGGCTCCTGGTGTTGGTGATCCA
ACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTA
TGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAGGATAGCAAGTCCAACATGACCTATT
CCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAG
CGACTCAACACACGCCCCATCAGCTACAGCTTCATTTCTGAGTAGCGTTACGTTTAGTTGGTATGACAGC
ACTGTTCTGAAAGGTTACAAGCATCCATTGACAATAGAAGATGTGTGGGATATTGAAGAAAATCTTAAAG
CCAAGTCACTCACCAGCAAGTTTAAGACGATCATGACAAAGGACCTGCAGAAAGCCAGGCAGGCTCTTCA
GAGGCGGCTGAAGAAGTCCCAGCAGAGCCCTGAGGGCACGTCACACGGATTGACCAAGAAGCAGAGTCAG
AGCCAAGATGTCCTTGTCCTGGAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTC
CCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAA
ATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAAATTTCTCATTGGCTTCGTGAAAGAC
CCTGACTCATATCCGTGGGTTGGATATATCTATGCAATCCTAATGTTCTCTGTGACTCTCATCCAGTCTT
TCTTCCTTCAGTGTTATTTTCAATTTTGTTTTGTGTTGGGAATGACTGTACGGACAACCATCATAGCTTC
CGTATATAAGAAGGCACTAACCCTATCTAACTTGGCTAGGAGGCAGTACACGATTGGAGAGACGGTGAAC
TTGATGTCTGTAGATTCCCAGAAGCTAATGGACGTGACCAACTACATACACTTGCTGTGGTCCAGTGTTT
TACAGATTGCTTTGTCCATTTTCTTCCTGTGGAGAGAGTTGGGACCTTCGATTTTAGCAGGTGTTGGGCT
TATGGTTCTCCTGGTCCCAGTTAATGGCGTCCTGGCTACCAAGATCAGGAAAATTCAGGTCCAGAATATG
AAGAATAAAGACAAACGCTTAAAAATCATGAATGAGATTCTTAGTGGGATTAAGATCCTGAAATACTTTG
CCTGGGAACCTTCCTTTAAAGAGCAAGTGAACAGCATTCGGAAGAAAGAACTCAGGAACTTGCTGCGCTT
CAGCCAGCTGCAGACGATTTTGATTTTCATCTTACACCTAACTCCAACCCTGGTGTCCGTGATCACATTT
TCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCT
TCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAGGCCAGCGTCTC
TGTAGACCGGCTGGAGCAGTACCTGGGAAGCGATGATCTGGACTTGTCTGCCATTCGCCATGTCTGCCAT
TTTGATAAAGCTGTGCAGTTCTCAGAAGCCTCTTTTACTTGGGACCGGGACTTGGAAGCCACAATCCAAG
ATGTGAACCTGGACATAAAACCAGGCCAACTGGTGGCTGTGGTGGGCACTGTAGGCTCTGGGAAGTCCTC
TTTGATATCAGCCATGCTGGGAGAAATGGAGAATGTCCATGGGCATATCACCATCAAGGGCTCCATAGCC
TACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACG
ATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGG
AGACATGGCTGAGATCGGAGAGAAGGGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCC
CGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGG
GAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAGACTCGGATCTTGGTTAC
ACATGGCATTCACTTCCTTCCCCAAGTGGATGAGATTGTCGTTCTGGGGAAAGGCACCATCTTAGAGAAG
GGATCCTATAGTGACCTGATGGACAAGAAAGGAGTGTTCGCTAAGAACTGGAAGACATTCATGAAGCATT
CGGGACCTGAAGGAGAGGCTACAGTCGATAACGACAGTGAGGAAGAGGATGGTGACTGTGGGCTGATCCC
AACTGTGGAGGAAATTCCTGACGATGCAGCTTCCTTGACCATGAGAAGGGAGAACAGCCTTCGCCGAACA
CTGAGCCGCAGCTCTAGGTCCGGCAGCAGGCGTGGGAAGTCCCTCAAAAGCTCCTTGAAAATTAAAAGTG
TGAATGCCTTGAATAAGAAGGAGGAAGTAGTGAAAGGACAAAAACTAATTAAGAAGGAATTTGTGGAAAC
TGGGAAGGTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATC
GTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTG
ACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGC
TCTGGGAATAGCACAAGGTATATTTTTGCTTAGTTCAAGTCTATGGAGTATATATGCTTGCAGAAATGCA
TCCAAAACTTTGCACAGGCAGCTGTTAACCAACATTCTCCGCGCACCCATGAGTTTTTTTGACACAACTC
CCACAGGCCGGATTGTGAACAGATTTGCCGGGGATATTTCTACGGTGGACGACACACTCCCCCAGACTTT
GCGAAGCTGGCTGCTGTGTTTCTTCGGCATAGTTAGCACTCTCGTGATGATCTGCATGGCCACCCCCATC
TTCATCATCATCATCATCCCTCTCAGCATTCTCTATGTATCTGTGCAGGTGTTTTATGTGGCTACATCCC
GCCAGCTGAGACGGCTGGATTCTGTCACCAAATCTCCGATCTATTCTCACTTTAGTGAGACTGTCTCTGG
TTTGCCTGTTATTCGGGCCTTTGAGCACCAGCAGAGATTTCTAGCAAACAGTGAGAAGCAGATTGACACC
AACCAGAAATGCGTCTTTTCCTGGATTACCTCCAACCGGTGGCTTGCCATTCGCCTGGAGCTGGTTGGAA
ACCTGATTGTCTTCTGCTCGGCCTTGCTTCTGGTTATTTATAAGAATTCCTTAACCGGGGACACTGTGGG
CTTTGTTCTGTCCAACGCCCTCAACATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTA
GAGACCAACATCGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAGGCGCCGTGGGTGA
CCGACAAGAAGCCTCCGGCAGATTGGCCCAAAAAAGGTGAGATCCAGTTCAACAACTATCAAGTGCGGTA
TCGGCCGGAGCTGGATCTGGTCCTGAAAGGGATTACTTGTAACATCAAGAGCACCGAGAAGGTCGGTGTG
GTGGGCAGGACCGGAGCTGGAAAATCATCCCTCACAAACTGCCTCTTCAGAATCTTAGAGTCTGCAGGTG
GCCAGATCATCATTGATGGGATTGATATTGCCTCCATTGGACTGCACGACCTTCGAGGGAGACTGACCAT
CATTCCCCAGGACCCCATTTTGTTCTCTGGGAATCTGAGGATGAATCTCGACCCTTTCAACAAATACTCG
GATGAGGAGATCTGGAGGGCCCTGGAATTGGCTCATCTCAAATCCTTTGTGGCTGGCCTGCAACTTGGGT
TGCTCCATGAAGTGACAGAGGGCGGTGACAACCTGAGCATAGGGCAGAGGCAGCTCCTATGCCTGGGTAG
GGCCGTGCTTCGAAAATCCAAAATCCTGGTCCTGGACGAAGCCACAGCCGCAGTGGATCTAGAGACGGAT
AGCCTCATTCAGACGACCATCCGGAACGAGTTCTCCCAGTGCACGGTCATCACTATCGCACACAGGCTGC
ACACCATCATGGACAGTGACAAGATAATGGTCCTAGACAGCGGCAAGATTGTTGAATACGGCAGTCCTGA
AGAACTGCTGTCCAATATGGGTCCCTTCTACTTGATGGCCAAGGAAGCCGGCATTGAAAGTGTGAACCAC
ACGGAGCTCTAG

Translation (1543 aa):
MDEFCNSTFWNLSLLKSPEADLPLCFEQTVLVWIPLGFLWLLAPWQLYRIYRSRTKRFAITKFYLAKQVF
VVCLLILAAIDLSLALTEDTGQATIPPVKYTNPILYLCTWLLVLVIQHCRQCCIQKNSWFLSMFWILSLL
CGIFQFQTLIRALLQDSKSNMTYSCLFFVSYGFQIVILILSAFSESSDSTHAPSATASFLSSVTFSWYDS
TVLKGYKHPLTIEDVWDIEENLKAKSLTSKFKTIMTKDLQKARQALQRRLKKSQQSPEGTSHGLTKKQSQ
SQDVLVLEDSKKKKKKSEATKDFPKSWLVKALFKTFYVVILKSFILKLAHDILLFLNPQLLKFLIGFVKD
PDSYPWVGYIYAILMFSVTLIQSFFLQCYFQFCFVLGMTVRTTIIASVYKKALTLSNLARRQYTIGETVN
LMSVDSQKLMDVTNYIHLLWSSVLQIALSIFFLWRELGPSILAGVGLMVLLVPVNGVLATKIRKIQVQNM
KNKDKRLKIMNEILSGIKILKYFAWEPSFKEQVNSIRKKELRNLLRFSQLQTILIFILHLTPTLVSVITF
SVYVLVDSQNVLNAEKAFTSITLFNILRFPLAMLPMVISSVIQASVSVDRLEQYLGSDDLDLSAIRHVCH
FDKAVQFSEASFTWDRDLEATIQDVNLDIKPGQLVAVVGTVGSGKSSLISAMLGEMENVHGHITIKGSIA
YVPQQAWIQNGTIKDNILFGSEYDEKKYQRVIEACALLPDLEMLPGGDMAEIGEKGINLSGGQKHRVSLA
RATYQDADIYILDDPLSAVDTHVGKHIFNKVVGPNGLLSGKTRILVTHGIHFLPQVDEIVVLGKGTILEK
GSYSDLMDKKGVFAKNWKTFMKHSGPEGEATVDNDSEEEDGDCGLIPTVEEIPDDAASLTMRRENSLRRT
LSRSSRSGSRRGKSLKSSLKIKSVNALNKKEEVVKGQKLIKKEFVETGKVKFSIYLKYLQAVGWWSLLFI
VIFYVLNYVAFIGTNLWLSAWTSDSEKQNGTDNSPSQRDMRIGVFGALGIAQGIFLLSSSLWSIYACRNA
SKTLHRQLLTNILRAPMSFFDTTPTGRIVNRFAGDISTVDDTLPQTLRSWLLCFFGIVSTLVMICMATPI
FIIIIIPLSILYVSVQVFYVATSRQLRRLDSVTKSPIYSHFSETVSGLPVIRAFEHQQRFLANSEKQIDT
NQKCVFSWITSNRWLAIRLELVGNLIVFCSALLLVIYKNSLTGDTVGFVLSNALNITQTLNWLVRMTSEV
ETNIVAVERINEYINVDNEAPWVTDKKPPADWPKKGEIQFNNYQVRYRPELDLVLKGITCNIKSTEKVGV
VGRTGAGKSSLTNCLFRILESAGGQIIIDGIDIASIGLHDLRGRLTIIPQDPILFSGNLRMNLDPFNKYS
DEEIWRALELAHLKSFVAGLQLGLLHEVTEGGDNLSIGQRQLLCLGRAVLRKSKILVLDEATAAVDLETD
SLIQTTIRNEFSQCTVITIAHRLHTIMDSDKIMVLDSGKIVEYGSPEELLSNMGPFYLMAKEAGIESVNH
TEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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