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Report for CCDS23985.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23985.1 Public Mus musculus 10 Bsg 23 108 98 CCDS HistoryNCBI Gene:12215Re-query CCDS DB by CCDS ID:23985.1Re-query CCDS DB by GeneID:12215See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23985.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067036.11 ENSMUSP00000070751.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067036.11Link to Ensembl Protein Viewer:ENSMUSP00000070751.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000067036Re-query CCDS DB by Protein ID:ENSMUSP00000070751
Original member Current member NCBI NM_009768.2 NP_033898.1 Accepted alive Link to Nucleotide Sequence:NM_009768.2Link to Protein Sequence:NP_033898.1Re-query CCDS DB by Nucleotide ID:NM_009768Re-query CCDS DB by Protein ID:NP_033898Link to BLAST:NP_033898.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033898.1 389 P18572-1 389 100% 0 0

Chromosomal Locations for CCDS 23985.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79704518 79704584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79708697 79709044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79709671 79709827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79710058 79710140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79710260 79710402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79710638 79710920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79711256 79711280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79711494 79711557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1170 nt):
ATGGCGGCGGCGCTGCTGCTGGCGCTGGCCTTCACGCTCTTGAGCGGCCAAGGCGCCTGCGCGGCGGCTG
GTTTCCTCAAGGCACCACTGTCGCAGGAGCGGTGGGCGGGGGGCAGCGTGGTCCTGCACTGTGAGGCTGT
GGGCAGCCCCATCCCCGAGATCCAGTGGTGGTTTGAAGGGAATGCTCCAAACGACAGCTGCTCCCAGCTC
TGGGATGGTGCCCGGCTGGACCGTGTTCACATCCATGCCGCCTACCGTCAGCATGCAGCCAGTTCGCTCT
CTGTTGATGGGCTCACCGCAGAGGACACAGGCACTTACGAGTGCCGGGCCAGCAGTGACCCAGACCGCAA
CCACCTTACTCGGCCACCCAGGGTCAAGTGGGTCCGTGCCCAGGCGAGCGTGGTGGTCCTTGAACCGGGC
ACCATCCAAACCTCTGTCCAGGAAGTCAACTCCAAAACACAGCTTACCTGCTCTTTGAACAGCAGTGGCG
TTGACATCGTTGGCCACCGCTGGATGAGAGGTGGCAAGGTACTGCAGGAGGACACTCTGCCCGACCTGCA
TACGAAGTACATAGTGGACGCAGATGACCGCTCTGGGGAATATTCCTGCATCTTCCTTCCTGAGCCTGTG
GGCAGAAGCGAGATCAATGTGGAAGGGCCACCCAGGATCAAGGTCGGAAAGAAATCAGAGCATTCCAGTG
AGGGAGAGCTTGCGAAACTGGTCTGCAAGTCCGATGCATCCTACCCTCCTATTACAGATTGGTTCTGGTT
TAAGACCTCTGACACTGGGGAAGAAGAGGCAATCACCAATAGCACTGAAGCCAATGGCAAGTATGTGGTG
GTATCCACGCCTGAGAAGTCACAGCTGACCATCAGCAACCTTGACGTAAATGTTGACCCTGGCACCTACG
TGTGTAATGCCACCAACGCCCAGGGCACTACTCGGGAAACCATCTCACTGCGTGTGCGGAGCCGCATGGC
AGCCCTCTGGCCCTTCCTAGGCATCGTGGCTGAGGTCCTGGTGTTGGTTACCATCATCTTTATCTATGAG
AAGAGGCGGAAGCCAGACCAGACCCTGGACGAGGATGACCCTGGCGCCGCCCCACTGAAGGGCAGTGGAA
CTCACATGAATGACAAGGACAAGAATGTACGCCAGAGGAACGCCACCTGA

Translation (389 aa):
MAAALLLALAFTLLSGQGACAAAGFLKAPLSQERWAGGSVVLHCEAVGSPIPEIQWWFEGNAPNDSCSQL
WDGARLDRVHIHAAYRQHAASSLSVDGLTAEDTGTYECRASSDPDRNHLTRPPRVKWVRAQASVVVLEPG
TIQTSVQEVNSKTQLTCSLNSSGVDIVGHRWMRGGKVLQEDTLPDLHTKYIVDADDRSGEYSCIFLPEPV
GRSEINVEGPPRIKVGKKSEHSSEGELAKLVCKSDASYPPITDWFWFKTSDTGEEEAITNSTEANGKYVV
VSTPEKSQLTISNLDVNVDPGTYVCNATNAQGTTRETISLRVRSRMAALWPFLGIVAEVLVLVTIIFIYE
KRRKPDQTLDEDDPGAAPLKGSGTHMNDKDKNVRQRNAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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