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Report for CCDS37642.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37642.1 Public Mus musculus 17 Taf8 23 108 98 CCDS HistoryNCBI Gene:63856Re-query CCDS DB by CCDS ID:37642.1Re-query CCDS DB by GeneID:63856See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37642.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067103.3 ENSMUSP00000063201.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067103.3Link to Ensembl Protein Viewer:ENSMUSP00000063201.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000067103Re-query CCDS DB by Protein ID:ENSMUSP00000063201
Original member NCBI NM_022015.4 NP_071298.1 Updated not alive Link to Nucleotide Sequence:NM_022015.4Link to Protein Sequence:NP_071298.1Re-query CCDS DB by Nucleotide ID:NM_022015Re-query CCDS DB by Protein ID:NP_071298
Current member NCBI NM_022015.5 NP_071298.1 Accepted alive Link to Nucleotide Sequence:NM_022015.5Link to Protein Sequence:NP_071298.1Re-query CCDS DB by Nucleotide ID:NM_022015Re-query CCDS DB by Protein ID:NP_071298Link to BLAST:NP_071298.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071298.1 308 Q9EQH4-1 308 100% 0 0

Chromosomal Locations for CCDS 37642.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 47489884 47489896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47490143 47490282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47493562 47493704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47494342 47494489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47496578 47496702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47498178 47498240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47498540 47498638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47501284 47501440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47502231 47502269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGGCTGACACGGCGGCCGGGCCTGGTGGCTCCGGAACGAGACCGGGAAGTAAGCAATCCACTAACCCTG
CTGATAACTACCATCTGGCCCGGAGGAGGACCCTGCAAGTGGTTGTGAGCTCCTTGCTGACAGAGGCGGG
ATTTGAGAGTGCCGAGAAAGCGTCTGTGGAGACACTGACAGAGATGCTGCAGAGCTACATCTCAGAAATC
GGGAGAAGTGCTAAGTCATACTGTGAGCACACAGCCAGGACCCAGCCCACACTGTCGGACATCGTGGTCA
CATTGGTTGAAATGGGCTTCAATGTTGACACTCTACCTGCCTATGCAAAACGGTCTCAGAGGATGGTCAT
CACTGCACCTCCAGTGACCAATCAGCCAGTGACCCCCAAGGCCCTCACTGCAGGGCAGAACCGGCCCCAC
CCGCCACACATCCCCAGCCATTTTCCTGAGTTTCCGGATCCCCACACCTACATCAAAACTCCGACATACC
GTGAGCCAGTGTCTGACTACCAGATCCTTCGGGAGAAGGCCGCATCTCAGAGACGAGACGTGGAGCGAGC
ACTCACCCGCTTCATGGCCAAGACAGGCGAGACCCAGAGTCTTTTCAAGGATGATGTCAGCACTTTTCCT
TTGATCGCTGCCAGACCGTTCACCATCCCCTACCTCACGGCCTTGCTTCCTTCTGAGCTGGAGATACAGC
AGATGGAAGAGACCGACTCCTCGGAGCAGGAGGAGCAAACAGATACAGAGAACAACGCTCTTCATATCAG
CACGGACGATTCCGGAGCTGAGAAGGAGAGCGCTTCTGTTCTGCAGCAGAGCTCCTCCTTGTCCGGCAGC
CGGAATGGCGAGGAGAGCGTCATCGATAACCCCTATCTGCGGCCCGTGAAGAAGCCCAAGATCCGTAGGA
AGAAGTCCCTCTCGTGA

Translation (308 aa):
MADTAAGPGGSGTRPGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVETLTEMLQSYISEI
GRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVITAPPVTNQPVTPKALTAGQNRPH
PPHIPSHFPEFPDPHTYIKTPTYREPVSDYQILREKAASQRRDVERALTRFMAKTGETQSLFKDDVSTFP
LIAARPFTIPYLTALLPSELEIQQMEETDSSEQEEQTDTENNALHISTDDSGAEKESASVLQQSSSLSGS
RNGEESVIDNPYLRPVKKPKIRRKKSLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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