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Report for CCDS8944.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8944.1 Public Homo sapiens 12 MBD6 24 110 108 CCDS HistoryNCBI Gene:114785Re-query CCDS DB by CCDS ID:8944.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8944.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355673.8 ENSP00000347896.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355673.8Link to Ensembl Protein Viewer:ENSP00000347896.3Re-query CCDS DB by Nucleotide ID:ENST00000355673Re-query CCDS DB by Protein ID:ENSP00000347896
Original member Current member NCBI NM_052897.4 NP_443129.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052897.4Link to Protein Sequence:NP_443129.3Re-query CCDS DB by Nucleotide ID:NM_052897Re-query CCDS DB by Protein ID:NP_443129Link to BLAST:NP_443129.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443129.3 1003 Q96DN6 1003 100% 0 0

Chromosomal Locations for CCDS 8944.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 57524304 57524416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57524720 57524822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57524953 57525115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57525348 57526388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57526566 57527227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57527507 57527660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57527848 57528017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57528147 57528560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57528666 57528718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57528946 57529009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57529160 57529234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3012 nt):
ATGAATGGGGGCAATGAGAGCAGTGGAGCAGACAGAGCTGGGGGCCCTGTGGCCACATCTGTCCCCATCG
GCTGGCAGCGCTGTGTGCGAGAGGGTGCTGTGCTCTACATCAGTCCAAGTGGCACAGAGCTGTCTTCCTT
GGAGCAAACCCGGAGCTACCTCCTCAGCGATGGGACCTGCAAGTGCGGTCTGGAGTGTCCACTTAATGTC
CCCAAGGTTTTCAACTTTGACCCTTTGGCCCCGGTGACCCCGGGTGGGGCTGGGGTGGGGCCAGCATCAG
AGGAGGACATGACCAAGCTGTGCAACCACCGGCGGAAAGCTGTTGCTATGGCAACTCTGTACCGCAGCAT
GGAGACCACCTGCTCACACTCTTCTCCTGGAGAGGGAGCGAGCCCCCAAATGTTCCACACTGTGTCCCCA
GGGCCCCCCTCTGCCCGCCCTCCCTGTCGAGTTCCTCCTACAACTCCACTTAATGGGGGTCCTGGCTCCC
TTCCCCCAGAACCACCCTCAGTTTCCCAGGCCTTTCCCACTCTAGCAGGCCCTGGGGGGCTTTTCCCCCC
AAGGCTTGCTGACCCAGTCCCTTCTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAGGGGCAATGCCCCC
TCTCCAGCCCCACCTCCTCCACCTGCTATCAGCCTCAATGCTCCCTCATACAACTGGGGAGCTGCCCTCA
GATCCAGCCTGGTGCCCTCTGACCTGGGCTCTCCTCCGGCCCCTCATGCCTCCTCCTCACCACCTTCAGA
CCCTCCTCTCTTCCACTGTAGTGATGCCTTAACACCCCCTCCCCTGCCCCCGAGCAATAATCTCCCCGCC
CACCCTGGTCCTGCCTCTCAGCCACCAGTGTCTTCAGCCACTATGCACCTGCCCCTGGTCCTGGGGCCCC
TGGGAGGGGCCCCCACGGTGGAGGGGCCTGGGGCACCCCCCTTCCTTGCTAGCAGCCTACTCTCTGCAGC
GGCCAAGGCACAGCATCCCCCACTACCCCCTCCCAGCACTTTACAGGGCCGAAGGCCCCGTGCCCAGGCA
CCCTCAGCTTCCCACTCCTCATCACTTCGTCCCTCTCAGCGTCGTCCCCGCAGACCCCCTACTGTATTTC
GATTGCTAGAAGGGAGAGGCCCTCAAACCCCTAGACGGAGCCGTCCTCGGGCCCCTGCTCCTGTCCCCCA
ACCCTTTTCTCTCCCGGAGCCATCCCAACCAATTCTCCCTTCTGTGCTGTCCCTGCTGGGACTCCCCACC
CCTGGCCCTTCCCACTCTGATGGAAGCTTTAACCTTTTGGGGTCAGATGCACACCTTCCTCCTCCCCCAA
CCCTCTCCTCAGGGAGCCCTCCCCAGCCCAGGCACCCCATCCAGCCCTCCCTGCCTGGGACCACCAGTGG
CAGCCTCAGCAGTGTGCCAGGTGCCCCTGCCCCACCAGCTGCCTCCAAAGCCCCAGTAGTCCCCAGCCCT
GTGCTTCAAAGCCCATCCGAAGGACTGGGGATGGGGGCAGGCCCGGCCTGCCCTCTGCCTCCCCTGGCTG
GTGGAGAGGCTTTCCCTTTCCCCAGCCCTGAGCAGGGCCTGGCACTGAGTGGAGCTGGCTTCCCTGGGAT
GCTTGGGGCCTTGCCTCTCCCTCTGAGTCTGGGGCAGCCTCCACCTTCTCCATTGCTCAACCACAGTTTA
TTTGGTGTGCTGACTGGGGGAGGAGGACAACCTCCCCCTGAGCCCCTGCTACCCCCACCAGGAGGACCTG
GTCCTCCCCTAGCCCCAGGAGAGCCTGAAGGGCCTTCGCTTTTGGTGGCTTCCTTGCTTCCTCCACCACC
CTCAGACCTTCTTCCACCTCCTTCAGCACCTCCCAGCAACCTCCTTGCCTCTTTCCTGCCCCTGTTGGCT
CTGGGCCCCACAGCTGGGGATGGGGAGGGATCTGCAGAGGGAGCCGGGGGTCCAAGTGGGGAGCCATTTT
CAGGCTTGGGAGACCTGTCCCCCCTACTTTTCCCCCCACTTTCAGCCCCCCCTACCCTCATAGCTTTAAA
TTCTGCGCTGCTGGCTGCCACCCTGGATCCCCCCTCGGGGACACCCCCCCAGCCCTGTGTCCTGAGTGCC
CCCCAACCTGGACCACCTACCTCCAGTGTCACCACGGCAACTACTGACCCGGGGGCCTCCTCTCTGGGCA
AGGCCCCCTCCAACTCAGGGAGACCCCCCCAACTCCTTAGCCCTCTGCTGGGTGCCAGCCTGCTGGGTGA
CCTGTCTTCACTGACCAGCAGCCCTGGAGCCCTCCCCAGCCTGTTGCAGCCTCCTGGCCCTCTTCTCTCT
GGCCAGTTGGGGCTGCAGCTCCTCCCTGGGGGGGGAGCTCCTCCACCCCTCTCAGAGGCTTCTAGTCCCC
TAGCCTGCCTGCTACAGAGTCTCCAGATCCCTCCAGAGCAGCCAGAAGCCCCCTGTCTACCCCCCGAGAG
CCCTGCCTCAGCCCTCGAACCAGAGCCTGCCAGGCCTCCCCTCAGTGCCTTAGCCCCACCCCATGGTTCT
CCCGACCCCCCAGTCCCTGAGCTGCTCACTGGGAGGGGGTCAGGGAAACGGGGCCGGAGGGGAGGAGGGG
GACTTAGGGGCATTAATGGTGAGGCCAGGCCAGCCCGGGGCCGAAAGCCTGGCAGCCGGCGGGAGCCTGG
CCGACTGGCCCTCAAATGGGGGACACGTGGTGGCTTCAATGGACAAATGGAAAGGTCCCCAAGAAGAACC
CACCATTGGCAGCATAATGGGGAGCTGGCTGAAGGGGGTGCTGAGCCCAAGGATCCACCCCCTCCCGGGC
CCCATTCTGAGGACCTTAAGGTGCCCCCGGGAGTAGTCAGAAAGTCTCGTCGTGGCCGTAGGAGAAAATA
CAACCCTACCCGGAACAGCAATAGCTCCCGCCAGGACATTACCTTGGAACCCAGCCCTACAGCCCGAGCA
GCTGTCCCTCTGCCTCCCCGGGCCCGCCCTGGCCGTCCTGCCAAAAACAAGAGGAGGAAACTGGCCCCAT
AG

Translation (1003 aa):
MNGGNESSGADRAGGPVATSVPIGWQRCVREGAVLYISPSGTELSSLEQTRSYLLSDGTCKCGLECPLNV
PKVFNFDPLAPVTPGGAGVGPASEEDMTKLCNHRRKAVAMATLYRSMETTCSHSSPGEGASPQMFHTVSP
GPPSARPPCRVPPTTPLNGGPGSLPPEPPSVSQAFPTLAGPGGLFPPRLADPVPSGGSSSPRFLPRGNAP
SPAPPPPPAISLNAPSYNWGAALRSSLVPSDLGSPPAPHASSSPPSDPPLFHCSDALTPPPLPPSNNLPA
HPGPASQPPVSSATMHLPLVLGPLGGAPTVEGPGAPPFLASSLLSAAAKAQHPPLPPPSTLQGRRPRAQA
PSASHSSSLRPSQRRPRRPPTVFRLLEGRGPQTPRRSRPRAPAPVPQPFSLPEPSQPILPSVLSLLGLPT
PGPSHSDGSFNLLGSDAHLPPPPTLSSGSPPQPRHPIQPSLPGTTSGSLSSVPGAPAPPAASKAPVVPSP
VLQSPSEGLGMGAGPACPLPPLAGGEAFPFPSPEQGLALSGAGFPGMLGALPLPLSLGQPPPSPLLNHSL
FGVLTGGGGQPPPEPLLPPPGGPGPPLAPGEPEGPSLLVASLLPPPPSDLLPPPSAPPSNLLASFLPLLA
LGPTAGDGEGSAEGAGGPSGEPFSGLGDLSPLLFPPLSAPPTLIALNSALLAATLDPPSGTPPQPCVLSA
PQPGPPTSSVTTATTDPGASSLGKAPSNSGRPPQLLSPLLGASLLGDLSSLTSSPGALPSLLQPPGPLLS
GQLGLQLLPGGGAPPPLSEASSPLACLLQSLQIPPEQPEAPCLPPESPASALEPEPARPPLSALAPPHGS
PDPPVPELLTGRGSGKRGRRGGGGLRGINGEARPARGRKPGSRREPGRLALKWGTRGGFNGQMERSPRRT
HHWQHNGELAEGGAEPKDPPPPGPHSEDLKVPPGVVRKSRRGRRRKYNPTRNSNSSRQDITLEPSPTARA
AVPLPPRARPGRPAKNKRRKLAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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