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Report for CCDS1035.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1035.1 Public Homo sapiens 1 PGLYRP3 24 110 108 CCDS HistoryNCBI Gene:114771Re-query CCDS DB by CCDS ID:1035.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1035.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000290722.1 ENSP00000290722.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000290722.1Link to Ensembl Protein Viewer:ENSP00000290722.1Re-query CCDS DB by Nucleotide ID:ENST00000290722Re-query CCDS DB by Protein ID:ENSP00000290722
Original member Current member EBI ENST00000683862.1 ENSP00000507327.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683862.1Link to Ensembl Protein Viewer:ENSP00000507327.1Re-query CCDS DB by Nucleotide ID:ENST00000683862Re-query CCDS DB by Protein ID:ENSP00000507327
Original member Current member NCBI NM_052891.3 NP_443123.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052891.3Link to Protein Sequence:NP_443123.1Re-query CCDS DB by Nucleotide ID:NM_052891Re-query CCDS DB by Protein ID:NP_443123Link to BLAST:NP_443123.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443123.1 341 Q96LB9 341 100% 0 0

Chromosomal Locations for CCDS 1035.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 153297956 153298134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153299113 153299231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153302409 153302607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153303857 153304009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153304947 153305065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153307066 153307267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153310611 153310665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGGGGACGCTGCCATGGCTTCTTGCCTTCTTCATTCTGGGTCTCCAGGCTTGGGATACTCCCACCATCG
TCTCCCGCAAGGAGTGGGGGGCAAGACCGCTCGCCTGCAGGGCCCTGCTGACCCTGCCTGTGGCCTACAT
CATCACAGACCAGCTCCCAGGGATGCAGTGCCAGCAGCAGAGCGTTTGCAGCCAGATGCTGCGGGGGTTG
CAGTCCCATTCCGTCTACACCATAGGCTGGTGCGACGTGGCGTACAACTTCCTGGTTGGGGATGATGGCA
GGGTGTATGAAGGTGTTGGCTGGAACATCCAAGGCTTGCACACCCAGGGCTACAACAACATTTCCCTGGG
CATCGCCTTCTTTGGCAATAAGATAGGCAGCAGTCCCAGCCCTGCTGCCTTATCAGCTGCAGAGGGTCTG
ATCTCCTATGCCATCCAGAAGGGTCACCTGTCGCCCAGGTATATTCAGCCACTTCTTCTGAAAGAAGAGA
CCTGCCTGGACCCTCAACATCCAGTGATGCCCAGGAAGGTTTGCCCCAACATCATCAAACGATCTGCTTG
GGAAGCCAGAGAGACACACTGCCCTAAAATGAACCTCCCAGCCAAATATGTCATCATCATCCACACCGCT
GGCACAAGCTGCACTGTATCCACAGACTGCCAGACTGTCGTCCGAAACATACAGTCCTTTCACATGGACA
CACGGAACTTTTGTGACATTGGATATCACTTCCTGGTGGGCCAGGATGGTGGCGTGTATGAAGGGGTTGG
ATGGCACATCCAAGGCTCTCACACTTATGGATTCAACGATATTGCCCTAGGAATTGCCTTCATCGGCTAC
TTTGTAGAAAAGCCTCCAAATGCTGCAGCGCTGGAGGCGGCCCAGGACCTGATCCAGTGTGCCGTGGTTG
AGGGGTACCTGACTCCAAACTACCTGCTGATGGGCCACAGTGACGTGGTCAACATCCTGTCCCCTGGGCA
GGCTTTGTATAACATCATCAGCACCTGGCCTCATTTCAAGCACTGA

Translation (341 aa):
MGTLPWLLAFFILGLQAWDTPTIVSRKEWGARPLACRALLTLPVAYIITDQLPGMQCQQQSVCSQMLRGL
QSHSVYTIGWCDVAYNFLVGDDGRVYEGVGWNIQGLHTQGYNNISLGIAFFGNKIGSSPSPAALSAAEGL
ISYAIQKGHLSPRYIQPLLLKEETCLDPQHPVMPRKVCPNIIKRSAWEARETHCPKMNLPAKYVIIIHTA
GTSCTVSTDCQTVVRNIQSFHMDTRNFCDIGYHFLVGQDGGVYEGVGWHIQGSHTYGFNDIALGIAFIGY
FVEKPPNAAALEAAQDLIQCAVVEGYLTPNYLLMGHSDVVNILSPGQALYNIISTWPHFKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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