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Report for CCDS41705.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41705.1 Public Homo sapiens 11 CARD16 24 110 108 CCDS HistoryNCBI Gene:114769Re-query CCDS DB by CCDS ID:41705.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 41705.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000673097.2 ENSP00000509408.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000673097.2Link to Ensembl Protein Viewer:ENSP00000509408.1Re-query CCDS DB by Nucleotide ID:ENST00000673097Re-query CCDS DB by Protein ID:ENSP00000509408
Original member Current member NCBI NM_052889.4 NP_443121.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052889.4Link to Protein Sequence:NP_443121.1Re-query CCDS DB by Nucleotide ID:NM_052889Re-query CCDS DB by Protein ID:NP_443121Link to BLAST:NP_443121.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443121.1 97 Q5EG05-2 97 100% 0 0

Chromosomal Locations for CCDS 41705.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 105043526 105043545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105044392 105044658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105045291 105045297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (294 nt):
ATGGCCGACAAGGTCCTGAAGGAGAAGAGAAAGCTGTTTATCCATTCCATGGGTGAAGGTACAATAAATG
GCTTACTGGATGAATTATTACAGACAAGGGTGCTGAACCAGGAAGAGATGGAGAAAGTAAAACGTGAAAA
TGCTACAGTTATGGATAAGACCCGAGCTTTGATTGACTCCGTTATTCCGAAAGGGGCACAGGCATGCCAA
ATTTGCATCACATACATTTGTGAAGAAGACAGTTACCTGGCAGAGACGCTGGGACTCTCAGCAGGTCCGA
TACCTGGAAATTAG

Translation (97 aa):
MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDSVIPKGAQACQ
ICITYICEEDSYLAETLGLSAGPIPGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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