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Report for CCDS14904.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14904.1 Public Mus musculus 1 Rpl31 23 108 98 CCDS HistoryNCBI Gene:114641Re-query CCDS DB by CCDS ID:14904.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14904.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086535.11 ENSMUSP00000083722.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086535.11Link to Ensembl Protein Viewer:ENSMUSP00000083722.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000086535Re-query CCDS DB by Protein ID:ENSMUSP00000083722
Original member Current member EBI ENSMUST00000178079.7 ENSMUSP00000136354.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178079.7Link to Ensembl Protein Viewer:ENSMUSP00000136354.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178079Re-query CCDS DB by Protein ID:ENSMUSP00000136354
Original member Current member EBI ENSMUST00000179954.7 ENSMUSP00000137631.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179954.7Link to Ensembl Protein Viewer:ENSMUSP00000137631.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179954Re-query CCDS DB by Protein ID:ENSMUSP00000137631
Original member NCBI NM_001252218.1 NP_001239147.1 Updated not alive Link to Nucleotide Sequence:NM_001252218.1Link to Protein Sequence:NP_001239147.1Re-query CCDS DB by Nucleotide ID:NM_001252218Re-query CCDS DB by Protein ID:NP_001239147
Current member NCBI NM_001252218.2 NP_001239147.1 Accepted alive Link to Nucleotide Sequence:NM_001252218.2Link to Protein Sequence:NP_001239147.1Re-query CCDS DB by Nucleotide ID:NM_001252218Re-query CCDS DB by Protein ID:NP_001239147Link to BLAST:NP_001239147.1
Original member NCBI NM_001252219.1 NP_001239148.1 Updated not alive Link to Nucleotide Sequence:NM_001252219.1Link to Protein Sequence:NP_001239148.1Re-query CCDS DB by Nucleotide ID:NM_001252219Re-query CCDS DB by Protein ID:NP_001239148
Current member NCBI NM_001252219.2 NP_001239148.1 Accepted alive Link to Nucleotide Sequence:NM_001252219.2Link to Protein Sequence:NP_001239148.1Re-query CCDS DB by Nucleotide ID:NM_001252219Re-query CCDS DB by Protein ID:NP_001239148Link to BLAST:NP_001239148.1
Original member NCBI NM_053257.3 NP_444487.1 Updated not alive Link to Nucleotide Sequence:NM_053257.3Link to Protein Sequence:NP_444487.1Re-query CCDS DB by Nucleotide ID:NM_053257Re-query CCDS DB by Protein ID:NP_444487
Current member NCBI NM_053257.4 NP_444487.1 Accepted alive Link to Nucleotide Sequence:NM_053257.4Link to Protein Sequence:NP_444487.1Re-query CCDS DB by Nucleotide ID:NM_053257Re-query CCDS DB by Protein ID:NP_444487Link to BLAST:NP_444487.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239147.1 125 P62900 125 100% 0 0
NP_001239148.1 125 P62900 125 100% 0 0
NP_444487.1 125 P62900 125 100% 0 0

Chromosomal Locations for CCDS 14904.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 39368149 39368255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39370014 39370139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39370954 39371066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39371302 39371333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (378 nt):
ATGGCTCCCGCAAAGAAGGGTGGCGAGAAGAAGAAGGGCCGTTCTGCCATCAACGAGGTGGTGACCCGAG
AATACACCATCAACATTCACAAGCGCATCCATGGAGTGGGCTTCAAGAAGCGTGCTCCTCGGGCACTCAA
AGAAATTCGGAAGTTTGCCATGAAGGAAATGGGGACACCAGATGTGCGCATTGACACCAGGCTCAATAAA
GCCGTCTGGGCCAAGGGAATAAGGAACGTTCCATATCGCATCCGAGTACGCTTGTCCAGAAAACGTAATG
AGGATGAGGATTCCCCAAACAAGCTCTACACGCTGGTAACTTACGTGCCTGTTACCACATTCAAAAATCT
ACAGACGGTCAACGTGGATGAGAACTAA

Translation (125 aa):
MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK
AVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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