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Report for CCDS475.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
475.1 Public Homo sapiens 1 ERMAP 24 110 108 CCDS HistoryNCBI Gene:114625Re-query CCDS DB by CCDS ID:475.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 475.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372514.7 ENSP00000361592.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372514.7Link to Ensembl Protein Viewer:ENSP00000361592.3Re-query CCDS DB by Nucleotide ID:ENST00000372514Re-query CCDS DB by Protein ID:ENSP00000361592
Original member Current member EBI ENST00000372517.8 ENSP00000361595.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372517.8Link to Ensembl Protein Viewer:ENSP00000361595.2Re-query CCDS DB by Nucleotide ID:ENST00000372517Re-query CCDS DB by Protein ID:ENSP00000361595
Original member Current member NCBI NM_001017922.2 NP_001017922.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001017922.2Link to Protein Sequence:NP_001017922.1Re-query CCDS DB by Nucleotide ID:NM_001017922Re-query CCDS DB by Protein ID:NP_001017922Link to BLAST:NP_001017922.1
Original member Current member NCBI NM_018538.4 NP_061008.2 Accepted alive Link to Nucleotide Sequence:NM_018538.4Link to Protein Sequence:NP_061008.2Re-query CCDS DB by Nucleotide ID:NM_018538Re-query CCDS DB by Protein ID:NP_061008Link to BLAST:NP_061008.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001017922.1 475 Q96PL5 475 100% 0 0
NP_061008.2 475 Q96PL5 475 100% 0 0

Chromosomal Locations for CCDS 475.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 42830449 42830533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42830768 42831115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42835038 42835154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42835732 42835764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42837158 42837190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42838901 42838921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42840033 42840053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42840152 42840178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42840270 42840296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42842517 42843232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGGAGATGGCGAGTTCTGCTGGCTCCTGGCTCTCTGGCTGCCTCATCCCTCTCGTCTTCCTCCGGCTGT
CTGTGCATGTGTCAGGCCACGCAGGGGATGCCGGCAAGTTCCACGTGGCCCTACTAGGGGGCACAGCCGA
GCTGCTCTGCCCTCTCTCCCTCTGGCCCGGGACGGTACCCAAGGAGGTGAGGTGGCTGCGGTCCCCATTC
CCGCAGCGCTCCCAGGCTGTTCACATATTCCGGGATGGGAAGGACCAGGATGAAGATCTGATGCCGGAAT
ATAAGGGGAGGACGGTGCTAGTGAGAGATGCCCAAGAGGGAAGTGTCACTCTGCAGATCCTTGACGTGCG
CCTTGAGGACCAAGGGTCTTACCGATGTCTGATCCAAGTTGGAAATCTGAGTAAAGAGGACACCGTGATC
CTGCAGGTTGCAGCCCCATCTGTGGGGAGTCTCTCCCCCTCAGCAGTGGCTCTGGCTGTGATCCTGCCTG
TCCTGGTACTTCTCATCATGGTGTGCCTTTGCCTTATCTGGAAGCAAAGAAGAGCAAAAGAAAAGCTTCT
CTATGAACATGTGACGGAGGTGGACAATCTTCTTTCAGACCATGCTAAAGAAAAAGGAAAACTCCATAAA
GCTGTCAAGAAACTCCGGAGTGAACTGAAGTTGAAAAGAGCTGCAGCAAACTCAGGCTGGAGAAGAGCCC
GGTTGCATTTTGTGGCAGTGACCCTGGACCCAGACACAGCACATCCCAAACTCATCCTTTCTGAGGACCA
AAGATGTGTAAGGCTTGGAGACAGACGGCAGCCTGTACCTGACAACCCCCAGAGATTTGATTTCGTTGTC
AGCATCCTAGGCTCTGAGTACTTCACGACTGGCTGCCACTACTGGGAGGTGTATGTGGGAGACAAGACCA
AATGGATTCTTGGAGTATGTAGTGAGTCAGTGAGCAGGAAGGGGAAGGTTACTGCCTCACCTGCCAATGG
ACACTGGCTTCTGCGACAGAGTCGTGGGAATGAGTATGAAGCTCTCACATCCCCGCAGACCTCCTTCCGC
CTTAAAGAGCCTCCACGGTGTGTGGGGATTTTCCTGGACTATGAAGCAGGAGTCATCTCTTTCTACAATG
TGACCAACAAGTCCCACATCTTTACTTTCACCCACAATTTCTCTGGCCCCCTTCGCCCTTTCTTTGAACC
TTGCCTTCATGATGGAGGAAAAAACACAGCACCTCTAGTCATTTGTTCAGAACTACACAAATCAGAGGAA
TCAATTGTCCCCAGGCCAGAAGGGAAAGGCCATGCTAATGGAGATGTGTCCCTCAAGGTGAACTCTTCTT
TACTACCCCCGAAGGCCCCAGAGCTGAAGGATATAATCCTGTCCTTGCCCCCTGACCTTGGCCCAGCCCT
TCAGGAGCTCAAGGCTCCTTCTTTTTAG

Translation (475 aa):
MEMASSAGSWLSGCLIPLVFLRLSVHVSGHAGDAGKFHVALLGGTAELLCPLSLWPGTVPKEVRWLRSPF
PQRSQAVHIFRDGKDQDEDLMPEYKGRTVLVRDAQEGSVTLQILDVRLEDQGSYRCLIQVGNLSKEDTVI
LQVAAPSVGSLSPSAVALAVILPVLVLLIMVCLCLIWKQRRAKEKLLYEHVTEVDNLLSDHAKEKGKLHK
AVKKLRSELKLKRAAANSGWRRARLHFVAVTLDPDTAHPKLILSEDQRCVRLGDRRQPVPDNPQRFDFVV
SILGSEYFTTGCHYWEVYVGDKTKWILGVCSESVSRKGKVTASPANGHWLLRQSRGNEYEALTSPQTSFR
LKEPPRCVGIFLDYEAGVISFYNVTNKSHIFTFTHNFSGPLRPFFEPCLHDGGKNTAPLVICSELHKSEE
SIVPRPEGKGHANGDVSLKVNSSLLPPKAPELKDIILSLPPDLGPALQELKAPSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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