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Report for CCDS24956.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24956.1 Public Mus musculus 11 Chrne 23 108 98 CCDS HistoryNCBI Gene:11448Re-query CCDS DB by CCDS ID:24956.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24956.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102556.9 ENSMUSP00000099616.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102556.9Link to Ensembl Protein Viewer:ENSMUSP00000099616.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102556Re-query CCDS DB by Protein ID:ENSMUSP00000099616
Original member Current member NCBI NM_009603.1 NP_033733.1 Accepted alive Link to Nucleotide Sequence:NM_009603.1Link to Protein Sequence:NP_033733.1Re-query CCDS DB by Nucleotide ID:NM_009603Re-query CCDS DB by Protein ID:NP_033733Link to BLAST:NP_033733.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033733.1 493 P20782 493 100% 0 0

Chromosomal Locations for CCDS 24956.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 70614973 70615128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70615208 70615314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70615400 70615586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70615661 70615775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70616955 70617069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70617147 70617347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70617605 70617705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70618155 70618310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70618410 70618519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70618625 70618669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70618753 70618895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70619130 70619175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGGCAGGGGCTCTGCTTGGTGCCCTGCTTCTCCTGACACTCTTTGGCAGAAGCCAGGGAAAGAATGAAG
AGCTTAGCCTGTATCACCATCTCTTCGACAATTATGATCCAGAATGCCGGCCAGTTAGGAGACCTGAGGA
CACTGTCACCATCACCCTCAAGGTCACCCTAACCAACCTCATCTCACTGAACGAGAAAGAAGAAACTCTG
ACCACCAGTGTCTGGATTGGCATTGACTGGCACGACTATCGGCTCAACTACAGCAAGGACGATTTTGCAG
GTGTAGGAATCCTCCGGGTCCCTTCAGAACATGTATGGCTGCCAGAGATTGTTCTAGAAAACAATATTGA
TGGGCAGTTTGGAGTGGCCTACGACAGCAATGTTCTAGTCTATGAGGGAGGCTATGTGAGCTGGTTGCCC
CCAGCCATCTACCGCAGCACCTGCGCAGTGGAGGTCACCTATTTCCCCTTTGACTGGCAGAACTGCTCTC
TCATTTTTCGCTCCCAGACCTACAATGCTGAGGAGGTGGAGTTCATCTTTGCCGTGGATGACGACGGCAA
TACCATCAACAAGATTGACATTGACACGGCAGCTTTTACCGAGAATGGAGAATGGGCCATAGACTACTGC
CCAGGCATGATTCGCCGCTATGAGGGAGGTTCCACAGAAGGTCCTGGAGAAACTGACGTCATCTATACGC
TCATCATCCGCCGGAAGCCGCTTTTTTACGTCATTAACATCATTGTGCCTTGCGTGCTCATTTCTGGCTT
GGTGCTGCTCGCTTACTTCCTGCCTGCGCAGGCTGGTGGCCAGAAATGCACGGTCTCTATCAACGTCCTG
CTAGCCCAGACTGTCTTCTTGTTTCTAATTGCCCAGAAAATTCCAGAGACTTCTCTGAGCGTGCCACTGC
TGGGCAGGTATCTTATATTCGTCATGGTGGTTGCCACGCTCATTGTCATGAATTGCGTCATCGTGCTCAA
CGTATCTTTGAGGACGCCAACGACTCATGCTACATCCCCTCGGCTGCGCCAGATTTTATTAGAGCTGCTG
CCGCGTCTCCTGGGCTCGAGCCCACCCCCAGAGGATCCCCGAACTGCCTCACCAGCGAGGCGTGCCTCGT
CTGTGGGCATTCTGCTCAGAGCGGAGGAGCTCATCTTGAAAAAGCCGCGGAGCGAACTCGTGTTTGAGGG
TCAGAGGCATCGGCACGGAACTTGGACCGCAGCCCTCTGCCAGAACCTGGGTGCTGCAGCCCCAGAAATC
CGCTGCTGTGTGGATGCTGTGAACTTTGTGGCTGAGAGCACAAGAGACCAGGAAGCCACTGGAGAGGAAC
TGTCCGACTGGGTGCGTATGGGGAAGGCCCTGGACAATGTCTGTTTTTGGGCAGCTTTGGTGCTCTTCAG
CGTTGGTTCTACTCTCATCTTCCTTGGGGGTTACTTCAACCAAGTTCCTGATCTCCCTTACCCACCGTGC
ATCCAACCATGA

Translation (493 aa):
MAGALLGALLLLTLFGRSQGKNEELSLYHHLFDNYDPECRPVRRPEDTVTITLKVTLTNLISLNEKEETL
TTSVWIGIDWHDYRLNYSKDDFAGVGILRVPSEHVWLPEIVLENNIDGQFGVAYDSNVLVYEGGYVSWLP
PAIYRSTCAVEVTYFPFDWQNCSLIFRSQTYNAEEVEFIFAVDDDGNTINKIDIDTAAFTENGEWAIDYC
PGMIRRYEGGSTEGPGETDVIYTLIIRRKPLFYVINIIVPCVLISGLVLLAYFLPAQAGGQKCTVSINVL
LAQTVFLFLIAQKIPETSLSVPLLGRYLIFVMVVATLIVMNCVIVLNVSLRTPTTHATSPRLRQILLELL
PRLLGSSPPPEDPRTASPARRASSVGILLRAEELILKKPRSELVFEGQRHRHGTWTAALCQNLGAAAPEI
RCCVDAVNFVAESTRDQEATGEELSDWVRMGKALDNVCFWAALVLFSVGSTLIFLGGYFNQVPDLPYPPC
IQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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