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Report for CCDS26522.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26522.1 Public Mus musculus 13 Msx2 23 108 98 CCDS HistoryNCBI Gene:17702Re-query CCDS DB by CCDS ID:26522.1Re-query CCDS DB by GeneID:17702See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26522.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021922.9 ENSMUSP00000021922.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021922.9Link to Ensembl Protein Viewer:ENSMUSP00000021922.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021922Re-query CCDS DB by Protein ID:ENSMUSP00000021922
Original member Current member NCBI NM_013601.2 NP_038629.2 Accepted alive Link to Nucleotide Sequence:NM_013601.2Link to Protein Sequence:NP_038629.2Re-query CCDS DB by Nucleotide ID:NM_013601Re-query CCDS DB by Protein ID:NP_038629Link to BLAST:NP_038629.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038629.2 267 Q03358 267 100% 0 0

Chromosomal Locations for CCDS 26522.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 53468169 53468593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 53472332 53472710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (804 nt):
ATGGCTTCTCCGACTAAAGGCGGTGACTTGTTTTCGTCGGATGAGGAGGGCCCCGCGGTACTGGCCGGCC
CGGGTCCCGGGCCTGGAGGAGCCGAGGGCAGCGCAGAGGAACGCAGGGTCAAGGTCTCCAGCCTGCCCTT
CAGCGTGGAGGCGCTCATGTCCGACAAGAAGCCGCCCAAGGAATCGCCCGCGGTGCCACCCGACTGCGCC
TCGGCTGGCGCTGTCCTGCGGCCGCTGCTGCTGCCGGGACACGGCGTCCGGGACGCTCACAGTCCCGGGC
CTCTCGTCAAGCCCTTCGAGACCGCCTCGGTCAAGTCGGAAAATTCCGAAGACGGAGCACCGTGGATACA
GGAGCCCGGCAGATACTCCCCGCCGCCCAGACATATGAGCCCCACCACCTGCACCCTGAGGAAACACAAG
ACCAACCGGAAGCCACGCACACCCTTCACCACATCCCAGCTTCTAGCCTTGGAGCGCAAGTTCCGCCAGA
AACAGTACCTGTCCATAGCAGAGCGGGCCGAGTTCTCCAGCTCTCTGAACCTTACAGAGACCCAGGTCAA
AATCTGGTTCCAGAACCGAAGGGCTAAGGCGAAAAGACTGCAAGAGGCGGAACTGGAAAAGCTGAAAATG
GCTGCCAAGCCTATGCTGCCCTCAGGCTTCAGTCTGCCCTTCCCTATCAACTCACCCCTGCAAGCAGCAT
CCATATACGGCGCATCCTACCCCTTCCATAGACCTGTGCTCCCCATCCCGCCTGTTGGACTCTATGCCAC
GCCGGTTGGATATGGCATGTACCATCTATCCTAA

Translation (267 aa):
MASPTKGGDLFSSDEEGPAVLAGPGPGPGGAEGSAEERRVKVSSLPFSVEALMSDKKPPKESPAVPPDCA
SAGAVLRPLLLPGHGVRDAHSPGPLVKPFETASVKSENSEDGAPWIQEPGRYSPPPRHMSPTTCTLRKHK
TNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKM
AAKPMLPSGFSLPFPINSPLQAASIYGASYPFHRPVLPIPPVGLYATPVGYGMYHLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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