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Report for CCDS88854.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88854.1 Public Mus musculus 15 Sp7 23 108 98 CCDS HistoryNCBI Gene:170574Re-query CCDS DB by CCDS ID:88854.1Re-query CCDS DB by GeneID:170574See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88854.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000229464.1 ENSMUSP00000154859.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000229464.1Link to Ensembl Protein Viewer:ENSMUSP00000154859.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000229464Re-query CCDS DB by Protein ID:ENSMUSP00000154859
Original member Current member NCBI NM_001348205.1 NP_001335134.1 Accepted alive Link to Nucleotide Sequence:NM_001348205.1Link to Protein Sequence:NP_001335134.1Re-query CCDS DB by Nucleotide ID:NM_001348205Re-query CCDS DB by Protein ID:NP_001335134Link to BLAST:NP_001335134.1

Chromosomal Locations for CCDS 88854.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 102358137 102359369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1233 nt):
ATGCTGACTGCAGCCTGCAGCAAATTTGGCGGCTCTAGCCCTCTGCGGGACTCAACAACCCTGGGGAAAG
GAGGCACAAAGAAGCCATACGCTGACCTTTCAGCCCCCAAAACCATGGGGGACGCCTACCCAGCTCCCTT
CTCAAGCACCAATGGACTCCTCTCTCCTGCAGGCAGTCCTCCGGCCCCAGCCTCTGGCTATGCAAATGAC
TACCCACCCTTCCCTCACTCATTTCCTGGGCCCACCGGTGCCCAAGACCCTGGGCTCCTAGTGCCTAAGG
GGCACAGCTCGTCTGACTGCCTGCCTAGTGTCTACACTTCCCTGGATATGACTCATCCCTATGGCTCGTG
GTACAAGGCAGGCATCCACGCAGGCATCTCACCAGGTCCAGGCAACACACCTACTCCTTGGTGGGACATG
CACCCTGGGGGCAACTGGCTAGGTGGTGGTCAGGGCCAGGGTGATGGGCTGCAAGGGACACTGTCCACAG
GCCCTGCCCAGCCTCCACTGAACCCCCAGCTGCCTACTTACCCATCTGACTTTGCTCCCCTTAACCCAGC
TCCCTACCCAGCGCCCCACCTCTTGCAACCAGGGCCCCAGCATGTCCTACCCCAAGATGTCTATAAGCCC
AAGGCGGTTGGCAATAGTGGGCAACTGGAGGGGAGTGGTGCAGCCAAACCCCCTCGGGGTGCTGGCACAG
GGGGCAGCGGTGGATATGCGGGCAGTGGGGCAGGGCGTTCTACCTGCGACTGCCCCAACTGTCAGGAGCT
AGAGCGGCTCGGGGCAGCAGCGGCTGGGCTGAGGAAGAAGCCCATTCACAGCTGCCACATCCCTGGGTGC
GGCAAGGTGTACGGCAAGGCTTCGCATCTGAAAGCCCACTTGCGCTGGCACACTGGCGAGAGGCCTTTCG
TCTGCAACTGGCTTTTCTGCGGCAAGAGGTTCACTCGCTCTGACGAGCTGGAGCGCCACGTGCGCACTCA
CACCCGGGAGAAGAAGTTCACCTGCCTGCTCTGTTCCAAGCGCTTTACCAGAAGCGACCACTTGAGCAAA
CATCAGCGCACCCACGGGGAGCCAGGCCCGGGACCGCCCCCAAGTGGCCCTAAGGAGCTGGGGGAGGGTC
GCAGCGTCGGGGAAGAAGAAGCCAATCAGCCGCCCCGATCTTCCACTTCGCCTGCACCCCCAGAAAAAGC
CCACGGAGGCAGCCCAGAGCAGAGCAACCTGCTAGAGATCTGA

Translation (410 aa):
MLTAACSKFGGSSPLRDSTTLGKGGTKKPYADLSAPKTMGDAYPAPFSSTNGLLSPAGSPPAPASGYAND
YPPFPHSFPGPTGAQDPGLLVPKGHSSSDCLPSVYTSLDMTHPYGSWYKAGIHAGISPGPGNTPTPWWDM
HPGGNWLGGGQGQGDGLQGTLSTGPAQPPLNPQLPTYPSDFAPLNPAPYPAPHLLQPGPQHVLPQDVYKP
KAVGNSGQLEGSGAAKPPRGAGTGGSGGYAGSGAGRSTCDCPNCQELERLGAAAAGLRKKPIHSCHIPGC
GKVYGKASHLKAHLRWHTGERPFVCNWLFCGKRFTRSDELERHVRTHTREKKFTCLLCSKRFTRSDHLSK
HQRTHGEPGPGPPPSGPKELGEGRSVGEEEANQPPRSSTSPAPPEKAHGGSPEQSNLLEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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